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The map label for this gene is ompD

Identifier: 194737938

GI number: 194737938

Start: 1625920

End: 1627008

Strand: Direct

Name: ompD

Synonym: SeSA_A1689

Alternate gene names: 194737938

Gene position: 1625920-1627008 (Clockwise)

Preceding gene: 194737424

Following gene: 194734451

Centisome position: 34.53

GC content: 50.14

Gene sequence:

>1089_bases
ATGAAACTTAAGTTAGTGGCAGTGGCAGTGACTTCCCTGTTGGCAGCAGGCGTTGTAAATGCAGCCGAGGTATATAACAA
AGACGGCAATAAACTGGATCTGTACGGTAAAGTTCACGCTCAGCATTATTTCTCTGATGATAACGGAAGTGATGGTGACA
AAACTTACGCGCGTCTGGGCTTTAAAGGCGAAACGCAGATCAACGATCAGTTAACCGGTTTTGGCCAGTGGGAATATGAA
TTCAAAGGCAACCGTACTGAAAGCCAGGGCGCTGACAAAGACAAAACCCGTCTGGCGTTTGCTGGTCTGAAATTCGCTGA
CTACGGTTCTTTCGACTACGGTCGTAACTACGGCGTTGCTTACGACATCGGCGCATGGACCGACGTTCTGCCAGAGTTTG
GTGGCGATACCTGGACTCAGACTGACGTCTTCATGACTGGCCGTACTACTGGTGTTGCCACCTACCGTAACACTGACTTC
TTTGGCTTGGTTGAAGGTCTGAACTTTGCCGCGCAGTACCAGGGCAAAAATGACCGTGACGGCGCGTACGAGTCTAACGG
CGACGGTTTCGGTCTGTCCGCAACGTATGAGTACGAAGGTTTTGGCGTAGGTGCGGCCTATGCGAAGTCTGACCGTACTA
ACAACCAGGTGAAAGCAGCGAGCAACCTGAATGCTGCGGGTAAAAACGCTGAAGTCTGGGCTGCTGGTCTGAAATATGAT
GCGAACAACATCTACCTGGCGACCACCTACTCCGAAACGCTGAACATGACCACCTTCGGTGAAGATGCAGCGGGTGATGC
GTTTATCGCGAATAAAACCCAGAACTTCGAAGCGGTTGCTCAGTATCAGTTCGACTTCGGTCTGCGTCCGTCCATCGCTT
ACCTGAAATCCAAAGGTAAAAACCTGGGTACTTACGGCGACCAGGATCTGGTTGAGTACATCGATGTTGGCGCAACCTAC
TACTTCAACAAAAACATGTCCACCTTCGTTGATTACAAAATCAACCTGCTGGACGACAGCGACTTCACCAAAGCGGCTAA
AGTGTCTACCGACAACATCGTTGCTGTTGGTCTGAACTACCAGTTCTAA

Upstream 100 bases:

>100_bases
CTTATGCCACTCCGTCATTTAAAAATAGTCTGCCATTGACAAACGCCTCGTTTAACAATGGTTGAGGAAACACGCTAAGA
AAATTATAAGGATTATTAAA

Downstream 100 bases:

>100_bases
TTTTGTTGTAGTCTGAATACAAAGCCAGTCCTTTCAGGACTGGCTTTTTCTCTTGATGTAGACTCGGTCATAAGGAGTAT
GCCGTGCAGACGTTCACTGG

Product: outer membrane porin protein LC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 362; Mature: 362

Protein sequence:

>362_residues
MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLGFKGETQINDQLTGFGQWEYE
FKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDF
FGLVEGLNFAAQYQGKNDRDGAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVKAASNLNAAGKNAEVWAAGLKYD
ANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATY
YFNKNMSTFVDYKINLLDDSDFTKAAKVSTDNIVAVGLNYQF

Sequences:

>Translated_362_residues
MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLGFKGETQINDQLTGFGQWEYE
FKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDF
FGLVEGLNFAAQYQGKNDRDGAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVKAASNLNAAGKNAEVWAAGLKYD
ANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATY
YFNKNMSTFVDYKINLLDDSDFTKAAKVSTDNIVAVGLNYQF
>Mature_362_residues
MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLGFKGETQINDQLTGFGQWEYE
FKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVAYDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDF
FGLVEGLNFAAQYQGKNDRDGAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVKAASNLNAAGKNAEVWAAGLKYD
ANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDFGLRPSIAYLKSKGKNLGTYGDQDLVEYIDVGATY
YFNKNMSTFVDYKINLLDDSDFTKAAKVSTDNIVAVGLNYQF

Specific function: Unknown

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Gram-negative porin family

Homologues:

Organism=Escherichia coli, GI1788544, Length=378, Percent_Identity=63.4920634920635, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1787641, Length=385, Percent_Identity=64.6753246753247, Blast_Score=441, Evalue=1e-125,
Organism=Escherichia coli, GI1786436, Length=366, Percent_Identity=61.7486338797814, Blast_Score=432, Evalue=1e-122,
Organism=Escherichia coli, GI1787160, Length=368, Percent_Identity=61.9565217391304, Blast_Score=414, Evalue=1e-117,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): OMPD_SALCH (Q57P83)

Other databases:

- EMBL:   AE017220
- RefSeq:   YP_216559.1
- HSSP:   P02931
- ProteinModelPortal:   Q57P83
- SMR:   Q57P83
- PRIDE:   Q57P83
- GeneID:   3334033
- GenomeReviews:   AE017220_GR
- KEGG:   sec:SC1572
- HOGENOM:   HBG673855
- OMA:   TTYSETR
- ProtClustDB:   CLSK2393541
- BioCyc:   SENT321314:SCH_1572-MONOMER
- InterPro:   IPR001897
- InterPro:   IPR013793
- InterPro:   IPR001702
- Gene3D:   G3DSA:2.40.160.10
- PRINTS:   PR00183
- PRINTS:   PR00182

Pfam domain/function: PF00267 Porin_1

EC number: NA

Molecular weight: Translated: 39680; Mature: 39680

Theoretical pI: Translated: 4.44; Mature: 4.44

Prosite motif: PS00576 GRAM_NEG_PORIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLG
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQLTGFGQWEYEFKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVA
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHEEEEECCEEECCCCCCCCCCCCEE
YDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDFFGLVEGLNFAAQYQGKNDRD
EECCCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCEEHHHCCCEEEEECCCCCCC
GAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVKAASNLNAAGKNAEVWAAGLKYD
CCCCCCCCCCCEEEEEEECCCCCCHHECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEC
ANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDFGLRPSIAYLKSKGK
CCCEEEEEEEHHHEEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCCCCHHHHHHHCCC
NLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKINLLDDSDFTKAAKVSTDNIVAVGLNY
CCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEEEEEC
QF
CC
>Mature Secondary Structure
MKLKLVAVAVTSLLAAGVVNAAEVYNKDGNKLDLYGKVHAQHYFSDDNGSDGDKTYARLG
CEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEC
FKGETQINDQLTGFGQWEYEFKGNRTESQGADKDKTRLAFAGLKFADYGSFDYGRNYGVA
CCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCHHEEEEECCEEECCCCCCCCCCCCEE
YDIGAWTDVLPEFGGDTWTQTDVFMTGRTTGVATYRNTDFFGLVEGLNFAAQYQGKNDRD
EECCCHHHHHHHHCCCCCCEEEEEEECCCCEEEEEECCCCEEHHHCCCEEEEECCCCCCC
GAYESNGDGFGLSATYEYEGFGVGAAYAKSDRTNNQVKAASNLNAAGKNAEVWAAGLKYD
CCCCCCCCCCCEEEEEEECCCCCCHHECCCCCCCCEEEECCCCCCCCCCCEEEEEEEEEC
ANNIYLATTYSETLNMTTFGEDAAGDAFIANKTQNFEAVAQYQFDFGLRPSIAYLKSKGK
CCCEEEEEEEHHHEEEEECCCCCCCCEEEECCCCCCEEEEEEEECCCCCCHHHHHHHCCC
NLGTYGDQDLVEYIDVGATYYFNKNMSTFVDYKINLLDDSDFTKAAKVSTDNIVAVGLNY
CCCCCCCHHHHHHHHCCEEEEECCCCCEEEEEEEEEECCCCCCCEEECCCCCEEEEEEEC
QF
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA