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The map label for this gene is ydaL [H]

Identifier: 194737816

GI number: 194737816

Start: 1726022

End: 1726585

Strand: Reverse

Name: ydaL [H]

Synonym: SeSA_A1783

Alternate gene names: 194737816

Gene position: 1726585-1726022 (Counterclockwise)

Preceding gene: 194735320

Following gene: 194738335

Centisome position: 36.67

GC content: 52.3

Gene sequence:

>564_bases
ATGAACCTTGACGATAAAGCGCTGTTTCTTGACGCCATGGAGGATGTCCAGCCGCTGAAACGCCATACTGATGTACACTG
GCAGCCAACGCGTAATCTTAAAACGCCCCAGCGTATCGACACGCTTCAGCTTGATAATTTCCTGACGACGGGCTTTCTGG
ATATTCTGCCGCTGAATGAACCGCTGGAATTTCGTCGGGAAGGATTGCAGCAGGGTGTCATCGATAAGTTACGCAGTGGG
AAATATCCTCAGCAAGCCAGCCTCAATTTGTTACGCCAGCCGGTCGAAACGTGCCGAAAAATGCTGTTTCGTTTTATCCT
GGAGGCGCAGAAAGAGGGGTTGCGTAATGTCCTGATCATTCATGGTAAAGGGCGAGAGGCGAAGTCGCATGCCAATATCG
TCCGAAGCTATGTGGCCCGCTGGTTGACAGAGTTTGAAGATGTACAGGCTTATTGTTCGGCGCTGCCGCATCATGGCGGC
GGCGGGGCATGTTATGTCGCGTTACGTAAAACGGTGCAGGCTAAGCAGGATAACTGGGAGCGCCATGCGAAGCGTAGTCG
GTAA

Upstream 100 bases:

>100_bases
CTGACATTGTCGCTGTTATTGGAAATAACTGTAAACCGTTGTCGGTATAACAGGGCACGGTTATGATAACGGCAGTCGCA
AAAACGCTGGAGGATGAACC

Downstream 100 bases:

>100_bases
ATCGTTGCCGCTGGCGGACAGGTCCGCCAGCGCAAGCTCGCGCGAACCCGATTTTATGCCTGATATAATACCTCATCCAA
ACGCTCAGGATTCTGCAAGA

Product: Smr protein/MutS2

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQLDNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSG
KYPQQASLNLLRQPVETCRKMLFRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG
GGACYVALRKTVQAKQDNWERHAKRSR

Sequences:

>Translated_187_residues
MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQLDNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSG
KYPQQASLNLLRQPVETCRKMLFRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG
GGACYVALRKTVQAKQDNWERHAKRSR
>Mature_187_residues
MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQLDNFLTTGFLDILPLNEPLEFRREGLQQGVIDKLRSG
KYPQQASLNLLRQPVETCRKMLFRFILEAQKEGLRNVLIIHGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGG
GGACYVALRKTVQAKQDNWERHAKRSR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=187, Percent_Identity=86.096256684492, Blast_Score=345, Evalue=1e-96,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 21641; Mature: 21641

Theoretical pI: Translated: 9.94; Mature: 9.94

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQLDNFLTTGFLDILPLNE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PLEFRREGLQQGVIDKLRSGKYPQQASLNLLRQPVETCRKMLFRFILEAQKEGLRNVLII
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
HGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGGGGACYVALRKTVQAKQDNWE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RHAKRSR
HHHHCCC
>Mature Secondary Structure
MNLDDKALFLDAMEDVQPLKRHTDVHWQPTRNLKTPQRIDTLQLDNFLTTGFLDILPLNE
CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
PLEFRREGLQQGVIDKLRSGKYPQQASLNLLRQPVETCRKMLFRFILEAQKEGLRNVLII
CHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
HGKGREAKSHANIVRSYVARWLTEFEDVQAYCSALPHHGGGGACYVALRKTVQAKQDNWE
ECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHH
RHAKRSR
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]