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The map label for this gene is ykgA [H]

Identifier: 194737385

GI number: 194737385

Start: 1737576

End: 1738427

Strand: Direct

Name: ykgA [H]

Synonym: SeSA_A1796

Alternate gene names: 194737385

Gene position: 1737576-1738427 (Clockwise)

Preceding gene: 194736207

Following gene: 194738109

Centisome position: 36.9

GC content: 38.26

Gene sequence:

>852_bases
ATGAAAAAAGCCATAATAATCTCAGTATTAGAGCAAATAGAAAAAAATCTTGAAGAGAGGATTGATATTGAAAAGCTGGT
TGTTATAACAGGTTATTCGCGAAGGAGTTTGCAGGATTTTTTTAAAGAAAAGTGTGGAGTCTCTATCGGAAAATATATCA
GACAACGCAAGTTGAGCAGAAGCGCCACTCTGCTAAAGCTGACCTCTCAGTCGGTCACAGATATCGCGTTCAGAATGGGG
TTTGATTCAGTGCAGTCCTATAGTCGAGAGTTCAAAAAAACATTTGGTGTCAATCCCAATAACTATCGCAAGGCTGATTT
CTGGGATCTCAGAAACCTACGGCCTCCCTACTGGCTTGACTGTGATGAGCATTATCAGTTCGAAATTTGTCAGCTTACGT
CAAAAGAAATTTTCGGATTTCAAACATCTCATCAGATCGCAACAAATGACCTTCCTAAAAAAGCGTCGCCTATAAAATGG
AAAATCATTCATGAGACGCTCAGAACGTGGGGCGAAAATGTGTATTGTCTCTCGTCTTTTAAGCCGGATCATACCAATGA
CCAGGTCATCGCCGTAAGCAGTTTTTTTGGTATGGAACATAATTCCGTCGATGGAGGCAAAATACCCATGTCGAGGGTAA
TAAAATGTGGTAAATATGCAAAATTCCATTTCGTTGGTCATAAGGAAAAATATCAACAATTTTCCAATACAATATATATG
TGTATATTGCCAAAACTGAATCTTATCAGGAGAGAAGGAGAAGATATTGAATACTTCCATTTGGCATCCGTCCAAAAGCA
ACAGAATAATGAATCCATTGTCGATCTTTATTATTATATCCCTGTACTGTAA

Upstream 100 bases:

>100_bases
TTGTTTTGCCAGAAAAGCTAACAACCCCACTAGTTTAATAACTCAGTATGTCAAATACCTTAAATGTTTATATTTTCGGC
TTCAATAAAGAGGAATGATG

Downstream 100 bases:

>100_bases
TGACTTCGTACCATCCACGTATTTCATCTGAAAAGCCTTCTCTTTTCAGAGCGGTAATAAAACTCTCAGTATTGATTCTG
ATAAAATAAGTGACTATTAA

Product: putative regulatory protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 283

Protein sequence:

>283_residues
MKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDHTNDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEKYQQFSNTIYM
CILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Sequences:

>Translated_283_residues
MKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDHTNDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEKYQQFSNTIYM
CILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
>Mature_283_residues
MKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSRSATLLKLTSQSVTDIAFRMG
FDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLDCDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKW
KIIHETLRTWGENVYCLSSFKPDHTNDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEKYQQFSNTIYM
CILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790857, Length=285, Percent_Identity=28.7719298245614, Blast_Score=130, Evalue=7e-32,
Organism=Escherichia coli, GI87081928, Length=105, Percent_Identity=41.9047619047619, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1790497, Length=101, Percent_Identity=32.6732673267327, Blast_Score=68, Evalue=5e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR011256 [H]

Pfam domain/function: PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 33201; Mature: 33201

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: PS00041 HTH_ARAC_FAMILY_1 ; PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
SATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLD
HHHEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEC
CDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLSSF
CCCCCCEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
KPDHTNDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEKYQQFSNTIYM
CCCCCCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEEEE
CILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEECCHHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC
>Mature Secondary Structure
MKKAIIISVLEQIEKNLEERIDIEKLVVITGYSRRSLQDFFKEKCGVSIGKYIRQRKLSR
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHCCHHHHHHHHHHHHH
SATLLKLTSQSVTDIAFRMGFDSVQSYSREFKKTFGVNPNNYRKADFWDLRNLRPPYWLD
HHHEEEECCCHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHCCCCCEEEC
CDEHYQFEICQLTSKEIFGFQTSHQIATNDLPKKASPIKWKIIHETLRTWGENVYCLSSF
CCCCCCEEEEEECHHHHCCCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECC
KPDHTNDQVIAVSSFFGMEHNSVDGGKIPMSRVIKCGKYAKFHFVGHKEKYQQFSNTIYM
CCCCCCCCEEEEEHHHCCCCCCCCCCCCCHHHHHHCCCCEEEEEECCHHHHHHHHCEEEE
CILPKLNLIRREGEDIEYFHLASVQKQQNNESIVDLYYYIPVL
EEECCHHHHHCCCCCCEEEEHHHHHHHCCCCCEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]