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The map label for this gene is cydB [H]

Identifier: 194737263

GI number: 194737263

Start: 422948

End: 423958

Strand: Direct

Name: cydB [H]

Synonym: SeSA_A0413

Alternate gene names: 194737263

Gene position: 422948-423958 (Clockwise)

Preceding gene: 194736276

Following gene: 194735086

Centisome position: 8.98

GC content: 55.19

Gene sequence:

>1011_bases
ATGACCATCGATCTTCCGGTTATCTGGTTTGCTATTATCGTGTTCGCCACGCTGATGTATATCGTAATGGATGGGTTCGA
TCTGGGCGTCGGTATCCTGTTTCCGTTTATTCGCGATAAACACGATCGCGATGTTATGGTGAACTCGGTCGCGCCGGTAT
GGGACGGGAACGAAACCTGGCTGGTGCTGGGCGGCGCCGGGCTTTTTGGCGCGTTCCCGTTGGCTTATGCCGTCATCACC
GACGCGCTGACTATCCCGCTGGTGGTTATGCTGCTTGGTCTTATCTTTCGCGGCGTCGCTTTTGAATTCCGTTTTAAAGC
CACCGAGTCGCATCGCGCGTTCTGGGATAAATCCTTTATCGTCGGGTCAATCCTGGCGACCTTTGCCCAGGGGGTTGTGG
TGGGGGCGGTGGTGAGCGGTTTTCAGGTGGAAGGGCGAACCTTTAGCGGTTCGCAGCTTGACTGGCTGACACCGTTTAAC
CTGTTCTGCGGCGTCGGTCTGGTCGTCACCTATGCGCTGCTGGGCGCTACCTGGCTGATTATGAAAAGCGAAGATCCACT
GCATAGCCGGATGTGCGCGCTGTCGCGCCCGTTGTTGATCGTCTTGTTGCTGGTGATGGGAGGCGTCAGCGTGTGGACGC
CGCTCACCCACGACGACATCGCCGAGCGCTGGTTCACGCTGCCCAATTTATACTACTTCCTGCCGGTGCCTGTGCTGGTG
CTGGCTTTTAGCATCTGGCTATGGCGCAGCGTGAAAAAACCAGAATCCCATGCGCGTCCATTTATTCTCACGCTAGGGTT
GATTTTTCTGGGGTTCAGCGGGTTAGGCATCAGTATTTGGCCGAATATTATTCCACCGGATATTTCGCTGTATGCCGCCG
CCGCGCCGCCGCAAAGTCAAAGCTTTATGCTGGTTGGGGCGCTGATAATCATCCCGATTATTCTGGCTTATACCTTCTGG
AGCTACTACGTCTTCCGTGGAAAAGTGCGACATGGTGAGGGATATCACTGA

Upstream 100 bases:

>100_bases
AAGGGCCGCAGCCGGCGGAGACACCGACCGCTGAAACCGATGGCAGACCAGCGCGTCCTATCTCTGCCGTGGGAGAATCG
CTTGAGCAGGAGAAATGCGA

Downstream 100 bases:

>100_bases
TGGTTAAAGTGAAAAAATGGTCGCGGCGAGTCGTATGGATGGTCGCGATATGGTGCGCCAGCGTGCTTCTGCTGGCGGGC
GTCGGAATGTTGTTCAGACT

Product: cytochrome D ubiquinol oxidase subunit II

Products: NA

Alternate protein names: Cytochrome bd-II oxidase subunit II [H]

Number of amino acids: Translated: 336; Mature: 335

Protein sequence:

>336_residues
MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIT
DALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFN
LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLV
LAFSIWLWRSVKKPESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFW
SYYVFRGKVRHGEGYH

Sequences:

>Translated_336_residues
MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVIT
DALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFN
LFCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLV
LAFSIWLWRSVKKPESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFW
SYYVFRGKVRHGEGYH
>Mature_335_residues
TIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETWLVLGGAGLFGAFPLAYAVITD
ALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFIVGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFNL
FCGVGLVVTYALLGATWLIMKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLVL
AFSIWLWRSVKKPESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQSQSFMLVGALIIIPIILAYTFWS
YYVFRGKVRHGEGYH

Specific function: Cytochrome oxidase subunit [H]

COG id: COG1294

COG function: function code C; Cytochrome bd-type quinol oxidase, subunit 2

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli CydB [H]

Homologues:

Organism=Escherichia coli, GI1787213, Length=362, Percent_Identity=29.0055248618785, Blast_Score=135, Evalue=4e-33,
Organism=Escherichia coli, GI1786954, Length=371, Percent_Identity=28.5714285714286, Blast_Score=132, Evalue=2e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003317 [H]

Pfam domain/function: PF02322 Cyto_ox_2 [H]

EC number: 1.10.3.-

Molecular weight: Translated: 37311; Mature: 37179

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETW
CEECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH
VGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYALLGATWLI
HHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
MKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLV
EECCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LAFSIWLWRSVKKPESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQSQ
HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCCC
SFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEGYH
CHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC
>Mature Secondary Structure 
TIDLPVIWFAIIVFATLMYIVMDGFDLGVGILFPFIRDKHDRDVMVNSVAPVWDGNETW
EECHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCCCCEEECCCCCCCCCCCEE
LVLGGAGLFGAFPLAYAVITDALTIPLVVMLLGLIFRGVAFEFRFKATESHRAFWDKSFI
EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHH
VGSILATFAQGVVVGAVVSGFQVEGRTFSGSQLDWLTPFNLFCGVGLVVTYALLGATWLI
HHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHEEE
MKSEDPLHSRMCALSRPLLIVLLLVMGGVSVWTPLTHDDIAERWFTLPNLYYFLPVPVLV
EECCCCHHHHHHHHCCHHHHHHHHHHCCHHHCCCCCHHHHHHHHHHCCCHHHHHHHHHHH
LAFSIWLWRSVKKPESHARPFILTLGLIFLGFSGLGISIWPNIIPPDISLYAAAAPPQSQ
HHHHHHHHHHCCCCHHHCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEECCCCCCC
SFMLVGALIIIPIILAYTFWSYYVFRGKVRHGEGYH
CHHHHHHHHHHHHHHHHHHHHHHHHHCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on diphenols and related substances as donors; With oxygen as acceptor [C]

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1658595; 8905232; 9278503; 8626304 [H]