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The map label for this gene is oppB [H]

Identifier: 194737110

GI number: 194737110

Start: 1815953

End: 1816873

Strand: Reverse

Name: oppB [H]

Synonym: SeSA_A1879

Alternate gene names: 194737110

Gene position: 1816873-1815953 (Counterclockwise)

Preceding gene: 194738028

Following gene: 194736526

Centisome position: 38.58

GC content: 50.92

Gene sequence:

>921_bases
ATGTTGAAATTTATTTTACGCCGCTGTCTGGAAGCGATTCCGACGCTGTTTATTCTTATTACCATCTCTTTCTTTATGAT
GCGCCTCGCGCCGGGGAGTCCTTTTACCGGCGAGCGCGCATTGCCGCCGGAAGTGCTGGCCAATATTGAAGCAAAATATC
ATCTGAACGATCCTATCATGACGCAGTACTTCAGCTACCTGAGGCAGCTGGCGCATGGCGATTTTGGACCATCGTTTAAA
TACAAAGATTACACGGTCAACGATCTGGTTGCCGCCAGCTTCCCCGTTTCGGCGAAACTTGGCGCCGCCGCTTTTTTACT
GGCGGTCATTATTGGTGTCAGCGCTGGCGTGATTGCCGCGCTAAAGCAAAATACGCGATGGGATTATACGGTGATGGGAT
TTGCCATGACCGGCGTCGTTATCCCCAGTTTTGTGGTAGCGCCGCTACTGGTGATGGTCTTTGCGATAACCTTGCAATGG
CTGCCTGGCGGCGGCTGGAACGGCGGGGCGTTAAAATTTATGATCCTGCCGATGGTCGCGCTTTCACTGGCCTATATTGC
CAGCATCGCTCGTATTACGCGCGGCTCAATGATTGAAGTTCTGCATTCGAACTTTATTCGTACCGCGCGGGCAAAAGGAT
TACCGATGCGCAGAATCATCTTCCGCCATGCGTTAAAACCTGCGCTGCTGCCGGTTTTATCCTATATGGGGCCAGCCTTT
GTCGGCATTATTACCGGCTCAATGGTGATTGAAACGATTTATGGCTTACCGGGCATTGGGCAGCTTTTCGTTAATGGCGC
GCTCAACCGCGATTACTCGCTGGTGTTAAGTTTGACCATTTTAGTCGGGGCTCTGACCATATTGTTTAACGCCATTGTCG
ATGTGCTCTATGCCGTTATCGACCCGAAAATTCGCTATTGA

Upstream 100 bases:

>100_bases
GGTTGTCCCATGGTGTCTTTTTTCATCGCACTATAACGTTCCCTGGCGGATCTGTTTGTCACGTCCGGGAAGTAAAGGCA
CAGGCCAGAAGGTACGGGCA

Downstream 100 bases:

>100_bases
TACTGGAGCTCGCGATGATGTTAAGTAAGAAAAACAGCGAGACGCTGGAAAATTTCAGTGAAAAGCTGGAGGTGGAAGGC
CGCAGCCTTTGGCAAGATGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLRQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Sequences:

>Translated_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLRQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY
>Mature_306_residues
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIMTQYFSYLRQLAHGDFGPSFK
YKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAALKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQW
LPGGGWNGGALKFMILPMVALSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=95.7516339869281, Blast_Score=593, Evalue=1e-171,
Organism=Escherichia coli, GI1787053, Length=310, Percent_Identity=36.4516129032258, Blast_Score=194, Evalue=8e-51,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.3195266272189, Blast_Score=193, Evalue=1e-50,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=35.1612903225806, Blast_Score=177, Evalue=6e-46,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.0718232044199, Blast_Score=142, Evalue=2e-35,
Organism=Escherichia coli, GI1787761, Length=328, Percent_Identity=31.4024390243902, Blast_Score=131, Evalue=6e-32,
Organism=Escherichia coli, GI1787550, Length=331, Percent_Identity=28.3987915407855, Blast_Score=123, Evalue=1e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33449; Mature: 33449

Theoretical pI: Translated: 10.23; Mature: 10.23

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFSYLRQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MLKFILRRCLEAIPTLFILITISFFMMRLAPGSPFTGERALPPEVLANIEAKYHLNDPIM
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHCCCCEEECCCHHH
TQYFSYLRQLAHGDFGPSFKYKDYTVNDLVAASFPVSAKLGAAAFLLAVIIGVSAGVIAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LKQNTRWDYTVMGFAMTGVVIPSFVVAPLLVMVFAITLQWLPGGGWNGGALKFMILPMVA
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHH
LSLAYIASIARITRGSMIEVLHSNFIRTARAKGLPMRRIIFRHALKPALLPVLSYMGPAF
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSMVIETIYGLPGIGQLFVNGALNRDYSLVLSLTILVGALTILFNAIVDVLYAVI
HHHHHHHHHHHHHHCCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]