Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 194736841

GI number: 194736841

Start: 357984

End: 358439

Strand: Direct

Name: ybaO [H]

Synonym: SeSA_A0349

Alternate gene names: 194736841

Gene position: 357984-358439 (Clockwise)

Preceding gene: 194736089

Following gene: 194734427

Centisome position: 7.6

GC content: 31.8

Gene sequence:

>456_bases
ATGACTGAGTATTTAGATGATAAAGATAAAGAATTATTGAAAGAAATCCAAAAAGATTGTGCGCAAACTTTATGGCAACT
TGCATATAAAGTGGGACTTACGCCCACACCATGTTTCAAGCGTTTAAAAAAACTTAAAGACAGGGGAGTTATCATTGGTC
AGTTCGCTTTATTGGATAAAGAAAAACTAGGTCTTTCACTTAATGTCTTTATTATGATTAACATATCTGAGGAGCAATAC
GCTAGTATTTCTGAGAAAATAAAGTCAATGCCTGAGGTTATTGCCTTTTATCGAATTTCTGGATCATTTAATTATTTAAT
GCATACAGTATTTACAGATATGAACGATTACTATAGTTTTTATGAGAAAATAATATTAACTAATTCTTCAATTAGTGGAT
CTGCATCGAGCTTTGTTCTTGAGCAAATAAAGGAAACAAACGAACTGCCAGTGTGA

Upstream 100 bases:

>100_bases
ATATGGTTTTTTAAATCAGAGTTCTCTTTATATACTTGCTTTATTTAATAAAGAAAATCTATTCACTTATGAAAATCAAT
GCGTGAGGTTCTGCTTTCCT

Downstream 100 bases:

>100_bases
AAGTGTGATGTGTACTTACTGATTTAATACATTATTATCCTTCTTACGGAACAACAACGGCAGATTGCGGCTGTTGAACA
AGGATTTTAATCAGCAGTAG

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 151; Mature: 150

Protein sequence:

>151_residues
MTEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQY
ASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV

Sequences:

>Translated_151_residues
MTEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQY
ASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV
>Mature_150_residues
TEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDKEKLGLSLNVFIMINISEEQYA
SISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSFYEKIILTNSSISGSASSFVLEQIKETNELPV

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=44, Blast_Score=137, Evalue=4e-34,
Organism=Escherichia coli, GI1787116, Length=151, Percent_Identity=32.4503311258278, Blast_Score=89, Evalue=1e-19,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17388; Mature: 17257

Theoretical pI: Translated: 5.29; Mature: 5.29

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDK
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEHHHHHHH
EKLGLSLNVFIMINISEEQYASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSF
HHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YEKIILTNSSISGSASSFVLEQIKETNELPV
HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
TEYLDDKDKELLKEIQKDCAQTLWQLAYKVGLTPTPCFKRLKKLKDRGVIIGQFALLDK
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCEEEEHHHHHHH
EKLGLSLNVFIMINISEEQYASISEKIKSMPEVIAFYRISGSFNYLMHTVFTDMNDYYSF
HHCCCEEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
YEKIILTNSSISGSASSFVLEQIKETNELPV
HHHHHHCCCCCCCCHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]