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The map label for this gene is fliR

Identifier: 194736717

GI number: 194736717

Start: 2043518

End: 2044312

Strand: Direct

Name: fliR

Synonym: SeSA_A2139

Alternate gene names: 194736717

Gene position: 2043518-2044312 (Clockwise)

Preceding gene: 194735991

Following gene: 194735108

Centisome position: 43.4

GC content: 50.94

Gene sequence:

>795_bases
ATGATACAGGTTACAAGCGAGCAATGGCTATACTGGCTGCATCTCTATTTCTGGCCTTTGCTGCGCGTACTGGCGCTGAT
TTCAACGGCGCCAATTCTCAGCGAGCGCGCTATTCCCAAGCGGGTAAAACTGGGGTTGGGAATAATGATTACCCTTGTTA
TCGCGCCGTCGCTACCGGCAAACGATACGCCGCTTTTTTCTATTGCCGCCTTATGGCTGGCGATGCAACAAATTCTGATC
GGTATTGCGCTGGGATTTACCATGCAATTCGCCTTTGCGGCGGTGCGTACCGCAGGTGAGTTTATCGGTCTGCAAATGGG
GCTTTCCTTTGCCACCTTCGTCGACCCGGGCAGCCACCTGAATATGCCGGTTCTGGCGCGTATTATGGATATGCTCGCCA
TGCTACTGTTTCTCACCTTTAATGGCCATTTGTGGCTTATTTCGCTGCTGGTCGATACCTTCCATACTCTGCCCATCGGT
AGTAACCCGGTGAACAGTAATGCATTTATGGCGCTCGCCAGGGCCGGAGGACTCATTTTCTTAAACGGACTGATGCTGGC
ATTGCCGGTCATTACCCTCCTGCTTACGCTCAACCTGGCGCTGGGGCTATTAAACCGCATGGCGCCGCAGCTCTCGATAT
TTGTTATCGGTTTCCCGCTTACCCTCACCGTCGGCATTATGCTGATGGCCGCGCTAATGCCATTAATTGCGCCGTTTTGC
GAACATTTATTCAGCGAAATTTTCAATTTGCTTGCTGATATTGTTAGCGAGATGCCGATAAATAATAACCCATAA

Upstream 100 bases:

>100_bases
TCGCAATTATCGTTGCCGGCCCGTGGATGCTCAACCTGCTGCTGGACTACGTACGCACTCTGTTCAGCAATTTACCTTAT
ATCATCGGATAAACAGAACG

Downstream 100 bases:

>100_bases
TTTTTATCCTGTTTTACTAAGGTTTATCCGAAAATAAATTTTAAAAAACATTCACCAGGATATATCCGCTGCCCCTTATT
TGTTTTTACTTCACTCACAT

Product: flagellar biosynthesis protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP

Sequences:

>Translated_264_residues
MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP
>Mature_264_residues
MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPANDTPLFSIAALWLAMQQILI
GIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHLNMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIG
SNPVNSNAFMALARAGGLIFLNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
EHLFSEIFNLLADIVSEMPINNNP

Specific function: Role in flagellar biosynthesis

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein. Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family

Homologues:

Organism=Escherichia coli, GI1788261, Length=260, Percent_Identity=88.8461538461538, Blast_Score=417, Evalue=1e-118,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLIR_SALTY (P54702)

Other databases:

- EMBL:   L49021
- EMBL:   AE006468
- PIR:   S78700
- RefSeq:   NP_460934.1
- GeneID:   1253502
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1981
- HOGENOM:   HBG700695
- OMA:   QLNIFAI
- ProtClustDB:   PRK05701
- BioCyc:   STYP99287:STM1981-MONOMER
- InterPro:   IPR006303
- InterPro:   IPR002010
- PRINTS:   PR00953
- TIGRFAMs:   TIGR01400

Pfam domain/function: PF01311 Bac_export_1

EC number: NA

Molecular weight: Translated: 28926; Mature: 28926

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

HASH(0x1f7d26f4)-; HASH(0x1f6022cc)-; HASH(0x1f2a2f74)-; HASH(0x1c71faec)-; HASH(0x1bfa12d0)-;

Cys/Met content:

0.4 %Cys     (Translated Protein)
6.1 %Met     (Translated Protein)
6.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
6.1 %Met     (Mature Protein)
6.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHH
LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHH
EHLFSEIFNLLADIVSEMPINNNP
HHHHHHHHHHHHHHHHHCCCCCCH
>Mature Secondary Structure
MIQVTSEQWLYWLHLYFWPLLRVLALISTAPILSERAIPKRVKLGLGIMITLVIAPSLPA
CCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCC
NDTPLFSIAALWLAMQQILIGIALGFTMQFAFAAVRTAGEFIGLQMGLSFATFVDPGSHL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCC
NMPVLARIMDMLAMLLFLTFNGHLWLISLLVDTFHTLPIGSNPVNSNAFMALARAGGLIF
CHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCHHH
LNGLMLALPVITLLLTLNLALGLLNRMAPQLSIFVIGFPLTLTVGIMLMAALMPLIAPFC
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHEEEEECHHHHHHHHHHHHHHHHHHHHHHH
EHLFSEIFNLLADIVSEMPINNNP
HHHHHHHHHHHHHHHHHCCCCCCH

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9324257; 11677609