Click here to switch to the map view.

The map label for this gene is yhjC [H]

Identifier: 194736666

GI number: 194736666

Start: 1598148

End: 1599056

Strand: Direct

Name: yhjC [H]

Synonym: SeSA_A1664

Alternate gene names: 194736666

Gene position: 1598148-1599056 (Clockwise)

Preceding gene: 194738280

Following gene: 194735925

Centisome position: 33.94

GC content: 52.81

Gene sequence:

>909_bases
ATGCAGCTGAATATGCTGGAAGCCATGAATATTTATGTCAATGTGGTAGAGCAAGGGAGCTTTATCCGCGCGGCGGAGGT
GCTTGAGCTGCACCGCCCTGCTGTTACCCGCGCCGTTCAGAATCTGGAACATGATCTGGGCGTTAAGCTCCTGCATCGCA
CAACACGACAGGTCAGTATGACGGATGAAGGGGAAGAGTTTTACCAGCGTTGCCTGTTGCTCTTAAGCGAGCTGGACGAC
GTCCGGCGATTATTTTCCAGCACGCAACCGCCGAAAGGCCGCCTGCGCCTTGACGTCCCTATTACGCTCGCCCGGGCAGT
CATCATTCCGGCTCTTGGAGATTTTCAGAACCGATACCCGGATATTGAGATTGTACTTGGCACGTCCGATCGCAAGATTG
ATTTGATTGCCGAGCGTGTGGACTGCGTCATCCGACTTGGTGAGCTTAATGACTCCAGTTTTGTTGCCAGACGTCTGGGA
ACGGCAGCCATGGTGACTTGTGCTGCGCCATCTTATCTTGCGAAGCATGGCACGCCGCACTCTATCGATGAGCTGATGAA
GTCCCACCGGGCTGTAAATTTTTTCAGTAATCACAGCCTGCAGATAATGGAGTGGAAATTCACGGTTGATGGCAGTATTG
CGTCAATAAAAGTTCCCTCCAGCATCCTGGTAGACAATTCAGAAGCGTTTCTTTCATGTGGGCTGGCGGGGTTGGGGATT
CTACACGGATTGCGTCCGTCGCTTGCACCCTTTATTGCCAGTGGAGAGCTGACAGAGATCCTCACTGATTTCCCGCCCCC
GCCAAAACCGGTTTCACTGCTTTACCCGGATCGTCGGTATCTGGCACCTAAAGTTCGTGTATTCATCGACTGGCTGTGCG
AGGTTTTTGGTCCGGATGCACATCTCTGA

Upstream 100 bases:

>100_bases
GATGAAACAATCAGCTCAGAAAGGGATATGTTCCAGCAGACAGGAATGTTATAAGGAGCTTCCCCCTTCGACACAAATAA
TGGTTGAGGACTGAGAACAG

Downstream 100 bases:

>100_bases
TAACGCTCTTTCGTGCATATCCGACCTGGCTATTGTTACTTTATCAGTAATTCTGTTTTAAAGATTGGATGGTTTTTCGT
AACAATAAAGAGGCTTAAGA

Product: LysR substrate binding domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEEFYQRCLLLLSELDD
VRRLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIVLGTSDRKIDLIAERVDCVIRLGELNDSSFVARRLG
TAAMVTCAAPSYLAKHGTPHSIDELMKSHRAVNFFSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGI
LHGLRPSLAPFIASGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCEVFGPDAHL

Sequences:

>Translated_302_residues
MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEEFYQRCLLLLSELDD
VRRLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIVLGTSDRKIDLIAERVDCVIRLGELNDSSFVARRLG
TAAMVTCAAPSYLAKHGTPHSIDELMKSHRAVNFFSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGI
LHGLRPSLAPFIASGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCEVFGPDAHL
>Mature_302_residues
MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSMTDEGEEFYQRCLLLLSELDD
VRRLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYPDIEIVLGTSDRKIDLIAERVDCVIRLGELNDSSFVARRLG
TAAMVTCAAPSYLAKHGTPHSIDELMKSHRAVNFFSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGI
LHGLRPSLAPFIASGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCEVFGPDAHL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI145693193, Length=295, Percent_Identity=36.6101694915254, Blast_Score=202, Evalue=3e-53,
Organism=Escherichia coli, GI1786401, Length=291, Percent_Identity=36.7697594501718, Blast_Score=166, Evalue=1e-42,
Organism=Escherichia coli, GI1789639, Length=296, Percent_Identity=34.1216216216216, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1787128, Length=300, Percent_Identity=28, Blast_Score=128, Evalue=5e-31,
Organism=Escherichia coli, GI1789440, Length=288, Percent_Identity=28.125, Blast_Score=126, Evalue=2e-30,
Organism=Escherichia coli, GI87081978, Length=302, Percent_Identity=31.1258278145695, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI1787589, Length=283, Percent_Identity=27.9151943462898, Blast_Score=122, Evalue=4e-29,
Organism=Escherichia coli, GI1788706, Length=295, Percent_Identity=26.4406779661017, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1789173, Length=288, Percent_Identity=23.6111111111111, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI157672245, Length=128, Percent_Identity=35.9375, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI87082132, Length=290, Percent_Identity=24.4827586206897, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788481, Length=289, Percent_Identity=22.1453287197232, Blast_Score=71, Evalue=8e-14,
Organism=Escherichia coli, GI1788748, Length=149, Percent_Identity=34.2281879194631, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1786448, Length=292, Percent_Identity=23.6301369863014, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1787601, Length=149, Percent_Identity=26.1744966442953, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI145693105, Length=154, Percent_Identity=28.5714285714286, Blast_Score=65, Evalue=7e-12,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33667; Mature: 33667

Theoretical pI: Translated: 6.42; Mature: 6.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM
CCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
TDEGEEFYQRCLLLLSELDDVRRLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCHHHHHHCCC
DIEIVLGTSDRKIDLIAERVDCVIRLGELNDSSFVARRLGTAAMVTCAAPSYLAKHGTPH
CEEEEECCCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHCHHHEEECCCHHHHHHCCCCH
SIDELMKSHRAVNFFSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGI
HHHHHHHHHHHEEEECCCCEEEEEEEEEECCCEEEEECCCEEEECCCHHHHHHHHHHHHH
LHGLRPSLAPFIASGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCEVFGPDA
HHCCCHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
HL
CC
>Mature Secondary Structure
MQLNMLEAMNIYVNVVEQGSFIRAAEVLELHRPAVTRAVQNLEHDLGVKLLHRTTRQVSM
CCCCHHHHHHHHHEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEC
TDEGEEFYQRCLLLLSELDDVRRLFSSTQPPKGRLRLDVPITLARAVIIPALGDFQNRYP
CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCHHHHHHHHHHCHHHHHHCCC
DIEIVLGTSDRKIDLIAERVDCVIRLGELNDSSFVARRLGTAAMVTCAAPSYLAKHGTPH
CEEEEECCCCCCHHHHHHHHHHHEEECCCCCHHHHHHHHCHHHEEECCCHHHHHHCCCCH
SIDELMKSHRAVNFFSNHSLQIMEWKFTVDGSIASIKVPSSILVDNSEAFLSCGLAGLGI
HHHHHHHHHHHEEEECCCCEEEEEEEEEECCCEEEEECCCEEEECCCHHHHHHHHHHHHH
LHGLRPSLAPFIASGELTEILTDFPPPPKPVSLLYPDRRYLAPKVRVFIDWLCEVFGPDA
HHCCCHHHHHHHCCCHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCC
HL
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503 [H]