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The map label for this gene is flgF

Identifier: 194736339

GI number: 194736339

Start: 1219346

End: 1220101

Strand: Direct

Name: flgF

Synonym: SeSA_A1246

Alternate gene names: 194736339

Gene position: 1219346-1220101 (Clockwise)

Preceding gene: 194736988

Following gene: 194734396

Centisome position: 25.89

GC content: 61.11

Gene sequence:

>756_bases
ATGGATCACGCAATTTATACCGCCATGGGGGCGGCCAGCCAGACGCTTAACCAGCAGGCGGTAACGGCCAGCAACCTGGC
TAATGCCTCAACGCCGGGCTTTCGCGCGCAGCTTAACGCGCTACGCGCGGTGCCCGTTGATGGCCTCTCTTTAGCGACGC
GCACGCTGGTTACGGCGTCGACGCCGGGGGCGGATATGACCCCGGGTCAGTTGGACTACACCTCCCGCCCACTGGATGTC
GCGTTACAGCAGGACGGCTGGCTGGTGGTGCAAGCGGCGGATGGCGCTGAAGGATATACCCGTAACGGGAATATCCAGGT
GGGCCCGACCGGGCAGTTAACCATTCAGGGACATCCGGTTATCGGCGAAGGCGGCCCGATCACCGTTCCTGAAGGGTCGG
AAATCACCATTGCGGCAGACGGCACGATCTCCGCGCTCAATCCCGGCGACCCGCCAAACACGGTGGCGCCCGTTGGGCGA
CTGAAGCTGGTCAAAGCGGAAGGCAATGAGGTGCAGCGGAGCGATGACGGTTTATTCCGCCTTACCGCCGAGGCACAGGC
TGAACGCGGGGCGGTACTGGCCGCCGATCCGTCAATTCGCATTATGTCGGGCGTGCTGGAGGGCAGTAACGTCAAGCCGG
TTGAAGCCATGACCGACATGATCGCCAACGCACGTCGTTTTGAAATGCAGATGAAGGTTATCACCAGCGTAGATGAGAAC
GAAGGGCGAGCTAACCAACTGCTGTCGATGAGTTAA

Upstream 100 bases:

>100_bases
CGCAGCGTAACTACCAGTCGAATGCGCAGACCATCAAAACCCAGGACCAGATCCTCAATACGCTGGTTAACCTGCGCTAA
GCGCCTGACGGGATAGCTTA

Downstream 100 bases:

>100_bases
TACAGGACATTTTATGATCAGTTCATTATGGATCGCCAAAACCGGTCTGGACGCGCAGCAAACCAATATGGATGTGATTG
CCAATAACCTGGCAAACGTC

Product: flagellar basal body rod protein FlgF

Products: NA

Alternate protein names: Putative proximal rod protein

Number of amino acids: Translated: 251; Mature: 251

Protein sequence:

>251_residues
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV
ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR
LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDEN
EGRANQLLSMS

Sequences:

>Translated_251_residues
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV
ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR
LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDEN
EGRANQLLSMS
>Mature_251_residues
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTASTPGADMTPGQLDYTSRPLDV
ALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPVIGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGR
LKLVKAEGNEVQRSDDGLFRLTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDEN
EGRANQLLSMS

Specific function: Unknown

COG id: COG4787

COG function: function code N; Flagellar basal body rod protein

Gene ontology:

Cell location: Bacterial flagellum basal body

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flagella basal body rod proteins family

Homologues:

Organism=Escherichia coli, GI1787317, Length=251, Percent_Identity=86.8525896414343, Blast_Score=444, Evalue=1e-126,
Organism=Escherichia coli, GI1787318, Length=257, Percent_Identity=31.1284046692607, Blast_Score=71, Evalue=5e-14,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGF_SALTY (P16323)

Other databases:

- EMBL:   X52094
- EMBL:   AE006468
- EMBL:   X51737
- PIR:   S08173
- RefSeq:   NP_460149.1
- PRIDE:   P16323
- GeneID:   1252696
- GenomeReviews:   AE006468_GR
- KEGG:   stm:STM1178
- HOGENOM:   HBG579156
- OMA:   QATRGPI
- ProtClustDB:   PRK12640
- BioCyc:   STYP99287:STM1178-MONOMER
- InterPro:   IPR010930
- InterPro:   IPR001444
- InterPro:   IPR019776
- InterPro:   IPR020013
- InterPro:   IPR012836
- TIGRFAMs:   TIGR03506
- TIGRFAMs:   TIGR02490

Pfam domain/function: PF06429 DUF1078; PF00460 Flg_bb_rod

EC number: NA

Molecular weight: Translated: 26103; Mature: 26103

Theoretical pI: Translated: 4.39; Mature: 4.39

Prosite motif: PS00588 FLAGELLA_BB_ROD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTAS
CCCCEEEHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCHHHHEEEEEEEC
TPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPV
CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCEEEECCCEE
IGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNEVQRSDDGLFR
ECCCCCEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECCCEEECCCCCEEE
LTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDEN
EEECCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHHEEEEEEECCCCC
EGRANQLLSMS
CCCHHHEEECC
>Mature Secondary Structure
MDHAIYTAMGAASQTLNQQAVTASNLANASTPGFRAQLNALRAVPVDGLSLATRTLVTAS
CCCCEEEHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEECCCCCHHHHEEEEEEEC
TPGADMTPGQLDYTSRPLDVALQQDGWLVVQAADGAEGYTRNGNIQVGPTGQLTIQGHPV
CCCCCCCCCCCCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEECCCCEEEECCCEE
IGEGGPITVPEGSEITIAADGTISALNPGDPPNTVAPVGRLKLVKAEGNEVQRSDDGLFR
ECCCCCEECCCCCEEEEEECCEEEECCCCCCCCCCCCCCEEEEEEECCCEEECCCCCEEE
LTAEAQAERGAVLAADPSIRIMSGVLEGSNVKPVEAMTDMIANARRFEMQMKVITSVDEN
EEECCCCCCCEEEEECCCEEEEEEECCCCCCCHHHHHHHHHHCCHHHHEEEEEEECCCCC
EGRANQLLSMS
CCCHHHEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2129540; 11677609; 2193164; 2181149