| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is traC [H]
Identifier: 194736337
GI number: 194736337
Start: 383230
End: 385902
Strand: Direct
Name: traC [H]
Synonym: SeSA_A0381
Alternate gene names: 194736337
Gene position: 383230-385902 (Clockwise)
Preceding gene: 194735032
Following gene: 194736434
Centisome position: 8.14
GC content: 60.72
Gene sequence:
>2673_bases ATGACAACAAAGACGGTTACGCAGATTTCAGCCGCAGCCCGGGGGAAATGGCCCGTTATTCTGCAGATGCTGCGTATTGA TGTACCCGAAAACGGCAGGCACGGTCCCTGTCCGAAATGTGGGGGCAAGGATCGTTTCCGCCTCGATGATCTTGACGGGC GCGGAACGTGGATTTGCAGCCAGTGCGGCAATGGTGACGGTCTGGATCTGGTTAAGCTCATGACCGGTTACGGCGTCAGA AAGGCTGCGCAGGAGGTGGCGCAGGTGCTTAATGTGCCGGATGTGCAGGAACTGCCCGTTAAGCCCGCCAGGCAAAAAGC CCCTAAACGCGATATGAGCCTTACCGTGGCGGCGCTGATGAAAGAGAGCCACACGGGAGAAAGCCCCTATCTGAACGGGA AAGGATTTGCCGGATATCCGGCCTCCCTGACCGGAAGCGTGCAGCATATCAGCGGTAAGGATTTTCCTGCCGGTTCCCTG CTGTTACCGCTCACCACCAACGCCGGAGCCGTGACCGGTGCGCAGCTTATCGCCCCGACGGGTGAAAAAAGCATACTGCC CGGCAGCACGATGAAAGGCGCGTTTGTGGCGCTCAGCCCGTTACCGTCTGAACCGCCGGTACAGGTGGTGATTACCGAAG GTTACGCCACGGCACTGACGGTGAGCCAGCTCACCGCCGGATGCGTAGTGGCTGCCATATCTGCAGGCAACCTGCCCAAC GTGGCGCAGTCGCTGCGGGCACGCTGGCCTGAGGTAAAAATTATCATCGCCGGTGATAACGATTTTCAGGACGGGGGCGA AAATCCCGGCAGATCCTTTGCTGAACGGGCGGCAAAAGCCGTCGGCGGCTGGATGACGTTGCCACCGGGAGAGATTAAGG CTGACTGGAATGATTTCCATCGGGAGCACGGTATTACCCGCGCCCGTGAAGCCTTTCGTAATGGTCTGGTGCTGTGTGGG GAGGGCCGCACGCAGCTGCCACACGGATTCCGTCTTACCCAGGAATATCTCTGGTATGAAAAACAGGTACAGCGCAACGG TGAAACGGAGATCCAGAACGTCAAAATATGCAACCCGCTGCGTGTGACGGCAATCACCTGCGATGCCGATGGCGGTAACT TCGGGCGGCTGCTGGAGTGGGAAGATACGTGGGGAGAGCGTCGCCGCTGGGCGATGCCGATGGAAATGCTGAGCGGCAGC GGTGAGGAGCTGCGCCGGGTTCTGCTGGTCAACGGACTGTCCTATATCAGCACCACCGGCGAGGCCCGCGCCCGCCTGAT GGAATATATCTCGTTGTGTAAACCGGAACGCCGCGTGACCTGCGTCAGCCGCACTGGCTGGCATGGTCAGGTTTACGTCC TGCAGGATGAGGTCAGCGGTGAAGGTGCAGAGGGGGTCATTCTCCAGACCACTTCCGTGCAGGGGCGCGATTTCCGTGTG TCGGGCACAACGGAGGAGTGGCGGGAGCACGTATCCCGCTACTGCACCGGCAACTCCCGCGTGGCGTTTGCCGTCAGTCT GGCGTTTGCTGCACCACTTTTACGGCTGGTTGGTATGGACGGCGGCGGCTACCACCTCAAGGGGGAATCGACGGACGGTA AGACCACCACCATGAAAGCGGCAACCTCCGTCTGCGGTGGGCCTGATTACTGGCAGACGTGGCGGGCAACCGGCAACGCG CTGGAGGGATGCGCCAGCCGCCGCAACGATGCCGCCATGATGCTCGATGAGATCCGGGAGGTGGACGGACGCGAGGCAGG CAATATCGCCTACATGCTGGCAAACGGTCAGGGCAAGGGCCGTGCCGGTACGGACGGTGAGCTGCGCACCCGTAAGCAAT GGCGGCTGCTGTTCTTTTCAACCGGCGAGCTGTCACTGACCGAACATGCGGCAAAAGCCGGTGAGCGTACCTTTGCCGGG ATGGAAGTCAGGATGATCCAGATCCCCAGCGATTCCGGGAAATTTGGCGTATTTGAGGAGCTGCACGGCTTCGACAGCGG CAAGGCACTGGCGGAGCATCTGGAGTGGGCCACGTCCAGCTACTACGGTTCGCCGTTCCGGGAGTGGCTGAAAGCCCTGA CCGCTGACCTTAACGGGCTGACGGCACAGGCAAAGTCACTGATGAAGGAATATACCGCCGCGCTGACCCCGAAAGATGCG GGTAATCAGGTGGGCCGGGCCGTCAACCGATTTGCACTGGTGGCGATGGCGGGCGAGCTGGCAACCCGTCTGGGTATCAC CGGCTGGCCTGAGGGGGAAGCCCTGCGGGCAACCCGCGTCTGTCTGAACGCATGGCTGAAAGATCGCGGGCATACCGCCA ATCAGGAAGATATTGCCGCGCTGGAGCAGGTACGCAGTTTCTTTACCGCGAATCAGTACAGCCGCTTTGCAGACTGGCAC GACGAGCGCAACCGCCCCGGCAATATGGTGGGCTGGCGCAGGGTGGAGAAAGGCAGTACCGCGCAGGGAACGGAAGCCGT CACCACGTTCTACGTCATGCCGTCCGGCTGGAAAGAAATCTGCCGTGGATTTGACCCGCGCAAGGTGGCGCGTTTGTGTG CGGATCGTGGATACCTGCTGCCCTCAACCGATGGCAAGCTCCAGACAACCATTCGCCCGCCAGAGATGAATCCCCGCAGG CTCTATGTCTTCAACAGCGAGGTGCCGGGTTAA
Upstream 100 bases:
>100_bases CCGTGCGCGGCTGTGAAGTGATGGCGGAGCTGTACCGCACACTTCCGGCGGCCTTTGATGATTTCTGCAGCACGGGTGTG GCACTGCATCAGGGGGAAGT
Downstream 100 bases:
>100_bases GGCTTTGCGTGAGTCTTATTTATTAAGGGTAACAGGTGAAACAGGTGGAACAACCGTATTTTACAAGGGCTGAGCCTGTT CCACCTTTTGAAATAGTGAG
Product: inner membrane protein
Products: NA
Alternate protein names: Replication primase [H]
Number of amino acids: Translated: 890; Mature: 889
Protein sequence:
>890_residues MTTKTVTQISAAARGKWPVILQMLRIDVPENGRHGPCPKCGGKDRFRLDDLDGRGTWICSQCGNGDGLDLVKLMTGYGVR KAAQEVAQVLNVPDVQELPVKPARQKAPKRDMSLTVAALMKESHTGESPYLNGKGFAGYPASLTGSVQHISGKDFPAGSL LLPLTTNAGAVTGAQLIAPTGEKSILPGSTMKGAFVALSPLPSEPPVQVVITEGYATALTVSQLTAGCVVAAISAGNLPN VAQSLRARWPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPGEIKADWNDFHREHGITRAREAFRNGLVLCG EGRTQLPHGFRLTQEYLWYEKQVQRNGETEIQNVKICNPLRVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGS GEELRRVLLVNGLSYISTTGEARARLMEYISLCKPERRVTCVSRTGWHGQVYVLQDEVSGEGAEGVILQTTSVQGRDFRV SGTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGGYHLKGESTDGKTTTMKAATSVCGGPDYWQTWRATGNA LEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKGRAGTDGELRTRKQWRLLFFSTGELSLTEHAAKAGERTFAG MEVRMIQIPSDSGKFGVFEELHGFDSGKALAEHLEWATSSYYGSPFREWLKALTADLNGLTAQAKSLMKEYTAALTPKDA GNQVGRAVNRFALVAMAGELATRLGITGWPEGEALRATRVCLNAWLKDRGHTANQEDIAALEQVRSFFTANQYSRFADWH DERNRPGNMVGWRRVEKGSTAQGTEAVTTFYVMPSGWKEICRGFDPRKVARLCADRGYLLPSTDGKLQTTIRPPEMNPRR LYVFNSEVPG
Sequences:
>Translated_890_residues MTTKTVTQISAAARGKWPVILQMLRIDVPENGRHGPCPKCGGKDRFRLDDLDGRGTWICSQCGNGDGLDLVKLMTGYGVR KAAQEVAQVLNVPDVQELPVKPARQKAPKRDMSLTVAALMKESHTGESPYLNGKGFAGYPASLTGSVQHISGKDFPAGSL LLPLTTNAGAVTGAQLIAPTGEKSILPGSTMKGAFVALSPLPSEPPVQVVITEGYATALTVSQLTAGCVVAAISAGNLPN VAQSLRARWPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPGEIKADWNDFHREHGITRAREAFRNGLVLCG EGRTQLPHGFRLTQEYLWYEKQVQRNGETEIQNVKICNPLRVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGS GEELRRVLLVNGLSYISTTGEARARLMEYISLCKPERRVTCVSRTGWHGQVYVLQDEVSGEGAEGVILQTTSVQGRDFRV SGTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGGYHLKGESTDGKTTTMKAATSVCGGPDYWQTWRATGNA LEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKGRAGTDGELRTRKQWRLLFFSTGELSLTEHAAKAGERTFAG MEVRMIQIPSDSGKFGVFEELHGFDSGKALAEHLEWATSSYYGSPFREWLKALTADLNGLTAQAKSLMKEYTAALTPKDA GNQVGRAVNRFALVAMAGELATRLGITGWPEGEALRATRVCLNAWLKDRGHTANQEDIAALEQVRSFFTANQYSRFADWH DERNRPGNMVGWRRVEKGSTAQGTEAVTTFYVMPSGWKEICRGFDPRKVARLCADRGYLLPSTDGKLQTTIRPPEMNPRR LYVFNSEVPG >Mature_889_residues TTKTVTQISAAARGKWPVILQMLRIDVPENGRHGPCPKCGGKDRFRLDDLDGRGTWICSQCGNGDGLDLVKLMTGYGVRK AAQEVAQVLNVPDVQELPVKPARQKAPKRDMSLTVAALMKESHTGESPYLNGKGFAGYPASLTGSVQHISGKDFPAGSLL LPLTTNAGAVTGAQLIAPTGEKSILPGSTMKGAFVALSPLPSEPPVQVVITEGYATALTVSQLTAGCVVAAISAGNLPNV AQSLRARWPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPGEIKADWNDFHREHGITRAREAFRNGLVLCGE GRTQLPHGFRLTQEYLWYEKQVQRNGETEIQNVKICNPLRVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGSG EELRRVLLVNGLSYISTTGEARARLMEYISLCKPERRVTCVSRTGWHGQVYVLQDEVSGEGAEGVILQTTSVQGRDFRVS GTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGGYHLKGESTDGKTTTMKAATSVCGGPDYWQTWRATGNAL EGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKGRAGTDGELRTRKQWRLLFFSTGELSLTEHAAKAGERTFAGM EVRMIQIPSDSGKFGVFEELHGFDSGKALAEHLEWATSSYYGSPFREWLKALTADLNGLTAQAKSLMKEYTAALTPKDAG NQVGRAVNRFALVAMAGELATRLGITGWPEGEALRATRVCLNAWLKDRGHTANQEDIAALEQVRSFFTANQYSRFADWHD ERNRPGNMVGWRRVEKGSTAQGTEAVTTFYVMPSGWKEICRGFDPRKVARLCADRGYLLPSTDGKLQTTIRPPEMNPRRL YVFNSEVPG
Specific function: Required for autonomous replication in E.coli. Transferred into the recipient cell during bacterial conjugation. Catalyzes the synthesis of short oligoribonucleotide primers with CpA or pCpA at their 5'-termini on a single stranded template DNA [H]
COG id: COG5519
COG function: function code L; Superfamily II helicase and inactivated derivatives
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 Toprim domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013610 - InterPro: IPR006171 [H]
Pfam domain/function: PF08401 DUF1738; PF01751 Toprim [H]
EC number: NA
Molecular weight: Translated: 97212; Mature: 97081
Theoretical pI: Translated: 8.32; Mature: 8.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTTKTVTQISAAARGKWPVILQMLRIDVPENGRHGPCPKCGGKDRFRLDDLDGRGTWICS CCCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE QCGNGDGLDLVKLMTGYGVRKAAQEVAQVLNVPDVQELPVKPARQKAPKRDMSLTVAALM CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCCHHHHHHHHH KESHTGESPYLNGKGFAGYPASLTGSVQHISGKDFPAGSLLLPLTTNAGAVTGAQLIAPT HHCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCC GEKSILPGSTMKGAFVALSPLPSEPPVQVVITEGYATALTVSQLTAGCVVAAISAGNLPN CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHH VAQSLRARWPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPGEIKADWNDFH HHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHH REHGITRAREAFRNGLVLCGEGRTQLPHGFRLTQEYLWYEKQVQRNGETEIQNVKICNPL HHCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCE RVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGSGEELRRVLLVNGLSYISTTG EEEEEEEECCCCCCCCEEEECCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHCHHHHHCCH EARARLMEYISLCKPERRVTCVSRTGWHGQVYVLQDEVSGEGAEGVILQTTSVQGRDFRV HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEEEE SGTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGGYHLKGESTDGKTTTMKA CCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHHH ATSVCGGPDYWQTWRATGNALEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKG HHHHCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCC RAGTDGELRTRKQWRLLFFSTGELSLTEHAAKAGERTFAGMEVRMIQIPSDSGKFGVFEE CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCEECCEEEEEEEECCCCCCCCHHHH LHGFDSGKALAEHLEWATSSYYGSPFREWLKALTADLNGLTAQAKSLMKEYTAALTPKDA HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC GNQVGRAVNRFALVAMAGELATRLGITGWPEGEALRATRVCLNAWLKDRGHTANQEDIAA CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH LEQVRSFFTANQYSRFADWHDERNRPGNMVGWRRVEKGSTAQGTEAVTTFYVMPSGWKEI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHH CRGFDPRKVARLCADRGYLLPSTDGKLQTTIRPPEMNPRRLYVFNSEVPG HCCCCHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCCCEEEEECCCCCC >Mature Secondary Structure TTKTVTQISAAARGKWPVILQMLRIDVPENGRHGPCPKCGGKDRFRLDDLDGRGTWICS CCCHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCEEEE QCGNGDGLDLVKLMTGYGVRKAAQEVAQVLNVPDVQELPVKPARQKAPKRDMSLTVAALM CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHCCCCCHHHCCCCCCHHHHHHHHH KESHTGESPYLNGKGFAGYPASLTGSVQHISGKDFPAGSLLLPLTTNAGAVTGAQLIAPT HHCCCCCCCEECCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEECCCCCCCCCEEECCC GEKSILPGSTMKGAFVALSPLPSEPPVQVVITEGYATALTVSQLTAGCVVAAISAGNLPN CCCCCCCCCCCCCEEEEECCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHEEECCCCCHH VAQSLRARWPEVKIIIAGDNDFQDGGENPGRSFAERAAKAVGGWMTLPPGEIKADWNDFH HHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCEECCCCCCCCCHHHHH REHGITRAREAFRNGLVLCGEGRTQLPHGFRLTQEYLWYEKQVQRNGETEIQNVKICNPL HHCCHHHHHHHHHCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEECCCE RVTAITCDADGGNFGRLLEWEDTWGERRRWAMPMEMLSGSGEELRRVLLVNGLSYISTTG EEEEEEEECCCCCCCCEEEECCCCCCHHHHCCCHHHHCCCCHHHHHHHHHHCHHHHHCCH EARARLMEYISLCKPERRVTCVSRTGWHGQVYVLQDEVSGEGAEGVILQTTSVQGRDFRV HHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCEEEEEEECCCCCEEEE SGTTEEWREHVSRYCTGNSRVAFAVSLAFAAPLLRLVGMDGGGYHLKGESTDGKTTTMKA CCCHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEHHHH ATSVCGGPDYWQTWRATGNALEGCASRRNDAAMMLDEIREVDGREAGNIAYMLANGQGKG HHHHCCCCHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCC RAGTDGELRTRKQWRLLFFSTGELSLTEHAAKAGERTFAGMEVRMIQIPSDSGKFGVFEE CCCCCCCCCCCCEEEEEEEECCCCCHHHHHHHCCCCEECCEEEEEEEECCCCCCCCHHHH LHGFDSGKALAEHLEWATSSYYGSPFREWLKALTADLNGLTAQAKSLMKEYTAALTPKDA HHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC GNQVGRAVNRFALVAMAGELATRLGITGWPEGEALRATRVCLNAWLKDRGHTANQEDIAA CHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHH LEQVRSFFTANQYSRFADWHDERNRPGNMVGWRRVEKGSTAQGTEAVTTFYVMPSGWKEI HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCHHHH CRGFDPRKVARLCADRGYLLPSTDGKLQTTIRPPEMNPRRLYVFNSEVPG HCCCCHHHHHHHHHCCCEECCCCCCCEEEEECCCCCCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1818755 [H]