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The map label for this gene is rtcB [C]

Identifier: 194736029

GI number: 194736029

Start: 369272

End: 370411

Strand: Direct

Name: rtcB [C]

Synonym: SeSA_A0363

Alternate gene names: 194736029

Gene position: 369272-370411 (Clockwise)

Preceding gene: 194735550

Following gene: 194735122

Centisome position: 7.84

GC content: 57.63

Gene sequence:

>1140_bases
ATGGGCAATTATATTCGTCCTTTATCAGATGTGGTATTTTCTATCGCATCAGATAACCTGTGGATCGAAGATTCCGCGAT
CCAACAATTATATACGACGGCTAAGTTAACCGGTATGAGACGCGTTATCGGGATGCCAGATCTGCATCCGGGGCGCGGCT
ACCCTATTGGCGCAGCCTTTTTCTCGCGTGGACGCTTTTATCCGGCGCTGGTCGGCAACGATATCGGCTGCGGCATGGCG
TTATGGCAAACGGATATTTTAGGGCGTAAATATAACGCCGATAAACTGGAGAAGCGGCTGGCGTCGCTGCCTGACGTGGC
GGACGCGCAGTGGCTGGAGGAGAATGTCCCCGCCGCAATGCAGCATCATTCGTGGCGCTCTGCGCTGGGTTCCATTGGCG
GCGGCAATCATTTTGCCGAGCTGCAGCAGGTCGATCGCATCGTCGATGCTGATTCGTTCGCTTTGTCGGGGTTGCAAAAA
GCGCAGTTATTACTGCTGGTACACAGTGGTTCACGCGGTCTGGGGCAAGCTATCCTGCGTCGTCATGTGGAGGCGTTTTC
GCATAACGGTTTGCCGGAAGATAGCGACGATGCGCGCCGCTACCTTGCAGAACATGACGATGCGCTGGCATTTGCCCGCA
GTAATCGCGCGCTGATTGCCCGCCGGATACTGCAACAGCTCAGGGCTGAGGGCGAACCGCGGCTGGATGTGGCGCATAAC
TTCGTTGAACCCTGTACTGTCGCGGGTGAGGCGGGGTGGCTGCATCGTAAAGGCGCTACGCCAGATGGGCAGGGACTGGT
GATTATCCCCGGCTCGCGCGGCGATTATAGCTGGCTGGTGAAACCCGTCGTCAGCGAGGAGAGCCTCTTCTCCCTGGCGC
ACGGCGCGGGGCGCAAATGGATGCGTACCGAGTGTAAAGACCGGTTATCGGCAAAATTTACCCCGCGACAGCTCTGCCGT
ACCGGGATGGGCAGCCGGGTGATTTGCCGCGATCGCCAGCTCATTTATGAGGAAGCGCCGCAGGCGTATAAATCCATCGA
TAGCGTTGTGGATTGTCTGGCAGACGCCGGACTGATTACGCCGGTTGCCTGCCTGCGTCCGGTGCTGACGCTGAAAACCT
CAGGGGAGAAAAGCGCATGA

Upstream 100 bases:

>100_bases
TCTGAACGCACTTTGCAGACATTTCCAGGATTAATTTTCTCTTATTGCTCTGGATTAGTCTGCCATTTCCTGATTTTTTA
ATTCATATATGGAATGGTAT

Downstream 100 bases:

>100_bases
TCTTACTGCAACTTTCTTCCGCACAGGGACCGGACGAGTGTTGTCTGGCGGTAAAAAAAGCGCTGGATTGTCTGACGAAA
GAAGCTGCCAGAGAAAAGGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 379; Mature: 378

Protein sequence:

>379_residues
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMRRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMA
LWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAAMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQK
AQLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCR
TGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA

Sequences:

>Translated_379_residues
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMRRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMA
LWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAAMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQK
AQLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCR
TGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA
>Mature_378_residues
GNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMRRVIGMPDLHPGRGYPIGAAFFSRGRFYPALVGNDIGCGMAL
WQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAAMQHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKA
QLLLLVHSGSRGLGQAILRRHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHNF
VEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKWMRTECKDRLSAKFTPRQLCRT
GMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLITPVACLRPVLTLKTSGEKSA

Specific function: Unknown

COG id: COG1690

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0027 (rtcB) family [H]

Homologues:

Organism=Homo sapiens, GI7657015, Length=443, Percent_Identity=27.765237020316, Blast_Score=105, Evalue=8e-23,
Organism=Escherichia coli, GI2367224, Length=414, Percent_Identity=29.7101449275362, Blast_Score=131, Evalue=8e-32,
Organism=Caenorhabditis elegans, GI17506665, Length=444, Percent_Identity=26.5765765765766, Blast_Score=103, Evalue=2e-22,
Organism=Drosophila melanogaster, GI24585217, Length=442, Percent_Identity=28.0542986425339, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001233 [H]

Pfam domain/function: PF01139 UPF0027 [H]

EC number: NA

Molecular weight: Translated: 41654; Mature: 41523

Theoretical pI: Translated: 8.08; Mature: 8.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMRRVIGMPDLHPGRGYPIGAAF
CCCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAAM
HHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHH
QHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSGSRGLGQAILR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
HHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKW
HHCCHHCCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHH
MRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLIT
HHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PVACLRPVLTLKTSGEKSA
HHHHHHHHHHEECCCCCCC
>Mature Secondary Structure 
GNYIRPLSDVVFSIASDNLWIEDSAIQQLYTTAKLTGMRRVIGMPDLHPGRGYPIGAAF
CCCCHHHHHHHHHHHCCCEEECHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHH
FSRGRFYPALVGNDIGCGMALWQTDILGRKYNADKLEKRLASLPDVADAQWLEENVPAAM
HHCCCCCHHHCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHHHCCCHHH
QHHSWRSALGSIGGGNHFAELQQVDRIVDADSFALSGLQKAQLLLLVHSGSRGLGQAILR
HHHHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHEEEEEEEECCCCCHHHHHHH
RHVEAFSHNGLPEDSDDARRYLAEHDDALAFARSNRALIARRILQQLRAEGEPRLDVAHN
HHHHHHHCCCCCCCCHHHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHH
FVEPCTVAGEAGWLHRKGATPDGQGLVIIPGSRGDYSWLVKPVVSEESLFSLAHGAGRKW
HHCCHHCCCCCCCEECCCCCCCCCEEEEEECCCCCHHHHHHHHHCHHHHHHHHHHCCCHH
MRTECKDRLSAKFTPRQLCRTGMGSRVICRDRQLIYEEAPQAYKSIDSVVDCLADAGLIT
HHHHHHHHHCCCCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCH
PVACLRPVLTLKTSGEKSA
HHHHHHHHHHEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9389475 [H]