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The map label for this gene is yciT [H]

Identifier: 194735862

GI number: 194735862

Start: 1776298

End: 1777050

Strand: Direct

Name: yciT [H]

Synonym: SeSA_A1833

Alternate gene names: 194735862

Gene position: 1776298-1777050 (Clockwise)

Preceding gene: 194738074

Following gene: 194735194

Centisome position: 37.72

GC content: 50.2

Gene sequence:

>753_bases
ATGAACTCCCGACAACAATCAATTTTGCAAATGGTGGTTGATAAAGGCCAGATGAGCGTTGCTGAACTGGCGAAAATTAC
CGGCGTATCTGAAGTCACGATTCGTCAGGATCTGAATACCCTGGAAAAGCAGAGCTATTTACGCCGTGCGCACGGTTTCG
CCGTTTCGCTTGAGAGCGATGACGTAGAGACTCGCATGATGACGAACTACACGCTAAAACGCCGACTGGCGGAGTTCGCC
GCCTCGCTGGTCAGTCCAGGGGAATCCGTTTTTATTGAAAATGGCAGCAGCAATGCGCTATTGGCCCGGACGCTGGCGGA
ACAAAAAGATGTCACGATCATCACCGTGAGCAGTTATATCGCGCACCTGCTCAAAGAGACCCCTTGCGAAGTCATTCTCC
TTGGTGGAATCTATCAGAAAAAAAGTGAAAGCATGGTAGGGCCGTTGACGCGACAGTTTATCCATCAAGTGCATTTCAGC
AAAGCATTTATCGGTATTGATGGCTGGCAGGCTGATACCGGTTTTACCGGACGCGACATGATGCGATCGGATGTGGTTAA
CGCTGTTCTGGAAAAAGGCTCAGAAGCGATTGTCCTCACCGACAGCTCCAAATTTGGCTGTGTGCATCCCTATCCCCTGG
GCCCGCTCTCTCGCTTCCATCGTGTCATTACGGATTCCAAAATTTCCGCCAGCGATCAAATGCAGTTAGAACATGCGGGG
CTGCTAGTCAATGTTATTGGCTCATCCGTTTAA

Upstream 100 bases:

>100_bases
CCTGGGAAATCTGATAGCGATTATTTGTCCGGGATGGCCGTTAGCCCTTCCCGGCTCTCTGACTGTCTGTTGACTCCTCT
TAACGAATAAAATTAATACT

Downstream 100 bases:

>100_bases
AATATTTCCCGATGGTTTGCCCTATGGCAAATCATCCTCTCTCTAAGACTTTTCTGACATCCCAATTAAGACTATTTACC
TGTTGTAACGAGCGTAACGT

Product: transcriptional regulator, DeoR family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFA
ASLVSPGESVFIENGSSNALLARTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS
KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRFHRVITDSKISASDQMQLEHAG
LLVNVIGSSV

Sequences:

>Translated_250_residues
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFA
ASLVSPGESVFIENGSSNALLARTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS
KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRFHRVITDSKISASDQMQLEHAG
LLVNVIGSSV
>Mature_250_residues
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESDDVETRMMTNYTLKRRLAEFA
ASLVSPGESVFIENGSSNALLARTLAEQKDVTIITVSSYIAHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFS
KAFIGIDGWQADTGFTGRDMMRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRFHRVITDSKISASDQMQLEHAG
LLVNVIGSSV

Specific function: Unknown

COG id: COG1349

COG function: function code KG; Transcriptional regulators of sugar metabolism

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH deoR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787540, Length=247, Percent_Identity=82.5910931174089, Blast_Score=423, Evalue=1e-120,
Organism=Escherichia coli, GI1789519, Length=251, Percent_Identity=30.2788844621514, Blast_Score=114, Evalue=8e-27,
Organism=Escherichia coli, GI1789059, Length=251, Percent_Identity=31.4741035856574, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI226510968, Length=249, Percent_Identity=30.1204819277108, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI87082344, Length=240, Percent_Identity=24.5833333333333, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1789829, Length=228, Percent_Identity=29.3859649122807, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1790753, Length=244, Percent_Identity=26.6393442622951, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1788069, Length=233, Percent_Identity=27.0386266094421, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787063, Length=242, Percent_Identity=26.8595041322314, Blast_Score=78, Evalue=7e-16,
Organism=Escherichia coli, GI1790635, Length=214, Percent_Identity=28.9719626168224, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1789170, Length=232, Percent_Identity=23.7068965517241, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014036
- InterPro:   IPR001034
- InterPro:   IPR018356
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00455 DeoR; PF08220 HTH_DeoR [H]

EC number: NA

Molecular weight: Translated: 27478; Mature: 27478

Theoretical pI: Translated: 6.89; Mature: 6.89

Prosite motif: PS00894 HTH_DEOR_1 ; PS51000 HTH_DEOR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESD
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQKDVTIITVSSYI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHH
AHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM
HHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
MRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRFHRVITDSKISASDQMQLEHAG
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHC
LLVNVIGSSV
CHHHHCCCCC
>Mature Secondary Structure
MNSRQQSILQMVVDKGQMSVAELAKITGVSEVTIRQDLNTLEKQSYLRRAHGFAVSLESD
CCHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCC
DVETRMMTNYTLKRRLAEFAASLVSPGESVFIENGSSNALLARTLAEQKDVTIITVSSYI
CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEEHHHHH
AHLLKETPCEVILLGGIYQKKSESMVGPLTRQFIHQVHFSKAFIGIDGWQADTGFTGRDM
HHHHHHCCCCEEEECCCHHHHCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHH
MRSDVVNAVLEKGSEAIVLTDSSKFGCVHPYPLGPLSRFHRVITDSKISASDQMQLEHAG
HHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHC
LLVNVIGSSV
CHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]