| Definition | Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633 chromosome, complete genome. |
|---|---|
| Accession | NC_011094 |
| Length | 4,709,075 |
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The map label for this gene is ldcC [H]
Identifier: 194735478
GI number: 194735478
Start: 278445
End: 280586
Strand: Direct
Name: ldcC [H]
Synonym: SeSA_A0261
Alternate gene names: 194735478
Gene position: 278445-280586 (Clockwise)
Preceding gene: 194734671
Following gene: 194737685
Centisome position: 5.91
GC content: 51.77
Gene sequence:
>2142_bases ATGAACATCATCGCCATTATGGGGCCGCACGGGGTTTATTATAAAGATGAACCCATCAAGGAGCTTGAGCGTGCATTACA ATCCCTGGGATTTCAAATTATCTGGCCGCAAAATAGCGTTGACTTGTTGAAGTTTATTGAACATAACCCGCGCATCTGCG GCGTTATTTTTGACTGGGATGAATACAGTCTCGACCTTTGTAGCGAAATCAACCAGTTAAATGAATACCTTCCTCTCTAC GCCTTTATCAATACCAACTCCACGCTGGACGTTAGCGTTCACGATATGCGCATGGCGCTGTGGTTTTTTGAGTATGCATT GGGGCTGGCTGAAGATATCGCGACACGCATTCATCAATATACAAACGAATATCTCGATAATATTACGCCGCCGTTTACCA AAGCGCTGTTTACCTACGCCAAAGAAGGAAAATATACCTTTTGTACGCCGGGTCATATGGCGGGAACGGCGTATCAGAAA AGCCCGCCAGGCTGTTTGTTTTATGACTTTTTTGGCGGCAATACCTTAAAAGCTGATGTGTCGATTTCGGTGACTGAACT GGGATCGCTGCTGGATCACACCGGACCGCATCTGGAAGCGGAAGAGTATATCGCCCGTACTTTTGGCGCCGAGCAGAGTT ATATGGTGACGAACGGTACGTCGACCTCGAATAAAATTGTCGGTATGTATGCCGCGCCTGCGGGAAGTACGCTACTTATT GATCGTAATTGCCATAAATCGCTGGCGCATTTGCTGATGATGAGCGATGTGGTGCCTCTCTGGTTGAAGCCGACGCGCAA TGCGCTCGGTATTCTCGGCGGTATTCCTAAGCGTGAATTTACCTGCGACAGCATTGCGCGTAAGGTGGCGGAAACCGCGC AGGCGCAATGGCCGGTTCATGCGGTTATCACCAATTCGACTTACGATGGTCTGCTGTATAACACTAACTGGATCAAGCAG ATGCTGGACGTTCCCTCGATCCATTTTGATTCCGCCTGGGTACCCTATACCCATTTCCATCCGATCTACCAGGGGAAAAG CGGGATGAGCGGCGATCGGGTGCCCGGAAAAGTGATTTTCGAAACGCAATCCACCCATAAAATGCTGGCGGCTTTTTCGC AGGCGTCGCTTATTCATATCAAAGGGGAATATGACGAAGAGACGTTTAACGAAGCGTTTATGATGCACACTTCCACATCG CCGAGCTATCCCATTGTCGCCTCTATCGAGACCGCGGCGGCGATGCTGCGCGGCAATCCAGGGAAAAGATTGATTAATCG TTCGGTGGAGCGGGCGCTCCATTTTCGTAAAGAGGTACAGCGGTTACGTGAAGAGTCCGATAGCTGGTTCTTTGATATCT GGCAGCCGGAAGAGGTTGATGAGGCCGAATGCTGGCCGGTAACGCCGGGAGAAACCTGGCATGGCTTCACCGATGCCGAT GACGATCATATGTTCCTCGATCCGGTTAAGGTGACAATCCTGACGCCGGGGATGGATGAACAGGGCAACATGAGCGAAGA GGGGATACCCGCCGCGCTGGTGGCGAAGTTCCTCGATGAGCGAGGCGTGGTGGTGGAAAAAACCGGGCCGTATAATTTGC TGTTTTTGTTCAGCATAGGGATTGATAAGACCCGTGCGATGGGGCTGCTGCGCGGGCTGACGGAATTTAAACGGGCCTAC GATCTTAACCTGCGCGTCAAAAATATGTTGCCGGATCTGTATGCGGAAGATCCGGATTTTTATCGCAATATGCGCATTCA GGATCTGGCGCAGGGGATCCATAAACTGATCCGCCAGCACGATCTTCCGGGGCTGATGTTGCGGGCGTTCGAGGTTTTAC CGGAGATGATCATGACCCCGCACCAGGCCTGGCAGCGTCAGATCAAAGGCGAGGTGGAAACCGTGGCGCTCGATCAACTG CCAGGGCGCGTTTCCGCGAATATGATCCTGCCTTATCCGCCAGGCGTTCCGCTGTTGATGCCCGGCGAGAGGATCACGCA ACAGAGTCGGGCCGTGCTCGATTTTCTGCTAATGCTCTGCTCGATTGGCCAGCATTATCCCGGTTTTGAAACGGATATTC ACGGCGCGAAACGGAATGAAGACGGGGTGTACCAGGTACGAGTCTTAAAACACGCCTGTTAG
Upstream 100 bases:
>100_bases GGCCGATGCATGGAACGCATTGTAATAAGATAAATCCTGTCGGTGCTTTGCATCGGCAGGATTGTTACTATGCTTATCTC AGGTTTTTTCAGGAGAAAGC
Downstream 100 bases:
>100_bases CTTGCCTGACGGGAATGTGACGAGTAACGTACTGATAATCAATAAAGGAGACGCTATGCTGGGATTAAAACAGGTTCATC ACATCGCGATCATTGCGACA
Product: lysine decarboxylase, constitutive
Products: NA
Alternate protein names: LDC [H]
Number of amino acids: Translated: 713; Mature: 713
Protein sequence:
>713_residues MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLY AFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTCDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQ MLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS PSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDAD DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQL PGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC
Sequences:
>Translated_713_residues MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLY AFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTCDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQ MLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS PSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDAD DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQL PGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC >Mature_713_residues MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWDEYSLDLCSEINQLNEYLPLY AFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQYTNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQK SPPGCLFYDFFGGNTLKADVSISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTCDSIARKVAETAQAQWPVHAVITNSTYDGLLYNTNWIKQ MLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTS PSYPIVASIETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDAD DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTRAMGLLRGLTEFKRAY DLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQHDLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQL PGRVSANMILPYPPGVPLLMPGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC
Specific function: LDC is constitutively but weakly expressed under various conditions [H]
COG id: COG1982
COG function: function code E; Arginine/lysine/ornithine decarboxylases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the Orn/Lys/Arg decarboxylase class-I family [H]
Homologues:
Organism=Escherichia coli, GI1786384, Length=712, Percent_Identity=91.1516853932584, Blast_Score=1375, Evalue=0.0, Organism=Escherichia coli, GI1790573, Length=710, Percent_Identity=70.9859154929578, Blast_Score=1104, Evalue=0.0, Organism=Escherichia coli, GI221142684, Length=720, Percent_Identity=34.8611111111111, Blast_Score=459, Evalue=1e-130, Organism=Escherichia coli, GI87082193, Length=620, Percent_Identity=34.1935483870968, Blast_Score=320, Evalue=2e-88, Organism=Escherichia coli, GI1786909, Length=696, Percent_Identity=32.0402298850575, Blast_Score=303, Evalue=2e-83,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005308 - InterPro: IPR011193 - InterPro: IPR000310 - InterPro: IPR008286 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01276 OKR_DC_1; PF03711 OKR_DC_1_C; PF03709 OKR_DC_1_N [H]
EC number: =4.1.1.18 [H]
Molecular weight: Translated: 80640; Mature: 80640
Theoretical pI: Translated: 5.46; Mature: 5.46
Prosite motif: PS00703 OKR_DC_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 3.8 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD CCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCEEEEEECCC EYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQY CCCHHHHHHHHHHHHCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQKSPPGCLFYDFFGGNTLKADV HHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI EEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCCCEEEE DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTCDSIARKVAETAQAQWPVH ECCHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEE AVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIF EEEECCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNP ECCHHHHHHHHHCCCEEEEEECCCCHHHHCCEEEEEECCCCCCCEEEEHHHHHHHHCCCC GKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDAD HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIG CCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEC IDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQH CCHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHC DLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLM CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHEEEHHCCCCCCCCCEEEECCCCCCEEC PGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCC >Mature Secondary Structure MNIIAIMGPHGVYYKDEPIKELERALQSLGFQIIWPQNSVDLLKFIEHNPRICGVIFDWD CCEEEEECCCCCCCCCCHHHHHHHHHHHCCEEEEECCCCHHHHHHHHCCCCEEEEEECCC EYSLDLCSEINQLNEYLPLYAFINTNSTLDVSVHDMRMALWFFEYALGLAEDIATRIHQY CCCHHHHHHHHHHHHCCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH TNEYLDNITPPFTKALFTYAKEGKYTFCTPGHMAGTAYQKSPPGCLFYDFFGGNTLKADV HHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE SISVTELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTSNKIVGMYAAPAGSTLLI EEEHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEECCCCCEEEE DRNCHKSLAHLLMMSDVVPLWLKPTRNALGILGGIPKREFTCDSIARKVAETAQAQWPVH ECCHHHHHHHHHHHHCCCCEEECCCCHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCEE AVITNSTYDGLLYNTNWIKQMLDVPSIHFDSAWVPYTHFHPIYQGKSGMSGDRVPGKVIF EEEECCCCCCEEECHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEE ETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASIETAAAMLRGNP ECCHHHHHHHHHCCCEEEEEECCCCHHHHCCEEEEEECCCCCCCEEEEHHHHHHHHCCCC GKRLINRSVERALHFRKEVQRLREESDSWFFDIWQPEEVDEAECWPVTPGETWHGFTDAD HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC DDHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIG CCCEEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEC IDKTRAMGLLRGLTEFKRAYDLNLRVKNMLPDLYAEDPDFYRNMRIQDLAQGIHKLIRQH CCHHHHHHHHHHHHHHHHHHCCCEEHHHHCCHHHCCCCHHHHCCCHHHHHHHHHHHHHHC DLPGLMLRAFEVLPEMIMTPHQAWQRQIKGEVETVALDQLPGRVSANMILPYPPGVPLLM CCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCHHEEEHHCCCCCCCCCEEEECCCCCCEEC PGERITQQSRAVLDFLLMLCSIGQHYPGFETDIHGAKRNEDGVYQVRVLKHAC CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9226257; 9339543; 9278503; 9723924 [H]