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The map label for this gene is cas [H]

Identifier: 194734989

GI number: 194734989

Start: 2983090

End: 2984007

Strand: Reverse

Name: cas [H]

Synonym: SeSA_A3092

Alternate gene names: 194734989

Gene position: 2984007-2983090 (Counterclockwise)

Preceding gene: 194737739

Following gene: 194734177

Centisome position: 63.37

GC content: 52.61

Gene sequence:

>918_bases
ATGAGCTGGCTGCCGCTGAATCCCATCCCGTTGAAAGACCGTGTTTCGATGATATTTCTCCAGTACGGACAAATAGATGT
GATCGACGGTGCGTTTGTGCTTATCGATAAAACGGGTGTACGTACCCATATTCCTGTTGGATCGGTGGCCTGCATCATGC
TGGAACCGGGGACGCGGGTTTCCCATGCCGCCGTGCGACTTGCGGCAACGGTGGGTACGTTACTGGTGTGGGTGGGGGAA
GCGGGCGTACGCGTTTACGCTTCGGGGCAGCCTGGTGGTGCCCGTTCCGACAAATTGCTTTATCAGGCGAAACTTGCACT
GGATGAAGATTTGCGGCTGAAGGTCGTGCGTAAAATGTTTGAATTACGTTTTGGCGAACCCGCGCCGAGCCGTCGTTCTG
TAGATCAATTGCGTGGTATTGAGGGGAGCCGTGTGCGGGCAACCTATGCACTACTTGCTAAGCAGTATGGCGTGAAATGG
CTGGGACGTCGCTACGATCCGAAAGACTGGGAGAAAGGCGATGTCATTAATCAGTGTATCAGCTCGGCAACCTCCTGCCT
CTATGGCGTAACGGAGGCGGCAATACTGGCTGCCGGATATGCGCCCGCGATTGGATTTGTGCACACCGGCAAGCCGCTTT
CTTTTGTCTATGATATTGCCGATATCATTAAATTTGAGACCGTTGTACCGAAAGCATTTGAAATTGCGCGACGTAATCCT
GCCGAGCCTGATCGTGATGTCCGTATTGCCTGCCGGGATATCTTCCGCAGTGGAAAAACATTGGCGAAATTGATTCCTCT
TATTGAAGATGTTCTCGCGGAAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTC
CTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAA

Upstream 100 bases:

>100_bases
GTATCACCGATGCAGCACTGTTTAAACAGGCTTTATTTTCCGGATTAGGTAAAAGTAAAGCGCTGGGCTGCGGAATGCTG
ATGGTAAAAAGGAAACGCAG

Downstream 100 bases:

>100_bases
CGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATT
CGAGCTGGTGTGTATGTTGG

Product: CRISPR-associated protein Cas1

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 305; Mature: 304

Protein sequence:

>305_residues
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGE
AGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKW
LGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNP
AEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDSGHRST

Sequences:

>Translated_305_residues
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGE
AGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKW
LGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNP
AEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>Mature_304_residues
SWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEA
GVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWL
GRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPA
EPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDSGHRST

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=305, Percent_Identity=93.1147540983606, Blast_Score=585, Evalue=1e-168,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 33310; Mature: 33179

Theoretical pI: Translated: 8.84; Mature: 8.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRV
CCCCCCCCCCCHHHHEEEEEECCCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCCCH
SHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMF
HHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
ELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWLGRRYDPKDWEKGDVINQCI
HHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHH
SSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNP
HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCC
AEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDS
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCC
GHRST
CCCCC
>Mature Secondary Structure 
SWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRV
CCCCCCCCCCHHHHEEEEEECCCEEEECCEEEEEECCCCEEECCCCCEEEEEECCCCCH
SHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMF
HHHHHHHHHHHHHHHHEECCCCEEEEECCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHH
ELRFGEPAPSRRSVDQLRGIEGSRVRATYALLAKQYGVKWLGRRYDPKDWEKGDVINQCI
HHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHCHHHHCCCCCCCCCCCHHHHHHHH
SSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNP
HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHHHHHHHHHHHHHHCHHHHHHHHCCC
AEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAEGEIQPPLPPEDSQPIAIPLPVALGDS
CCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCC
GHRST
CCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]