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The map label for this gene is flgD

Identifier: 194734983

GI number: 194734983

Start: 1217389

End: 1218087

Strand: Direct

Name: flgD

Synonym: SeSA_A1244

Alternate gene names: 194734983

Gene position: 1217389-1218087 (Clockwise)

Preceding gene: 194737972

Following gene: 194736988

Centisome position: 25.85

GC content: 54.51

Gene sequence:

>699_bases
ATGTCTATTGCCGTAAATATGAATGACCCGACCAACACGGGCGTCAAAACGACGACCGGCAGCGGGTCGATGACCGGAAG
CAACGCTGCCGATCTGCAAAGCAGTTTCCTGACCTTACTGGTCGCGCAATTGAAGAACCAGGACCCGACTAACCCATTAC
AAAATAATGAGTTAACGACACAGTTGGCGCAAATCAGTACCGTGAGCGGCATTGAAAAACTGAATACGACGCTGGGGGCT
ATTTCCGGGCAAATCGATAATAGTCAGTCCCTACAGGCGACCACGCTGATTGGACATGGCGTTATGGTGCCTGGCACCAC
AATTCTGGCGGGTAAAGGCGCGGAAGAAGGGGCCGTGACGTCCACGACGCCGTTTGGCGTGGAATTGCAACAGCCTGCGG
ACAAAGTGACGGCAACCATTACCGATAAAGATGGCCGGGTGGTACGGACGCTGGAGATCGGTGAGTTGCGAGCCGGGGTA
CACACCTTTACCTGGGATGGTAAGCAAACGGACGGAACAACGGTACCGAATGGTTCTTACAACATTGCGATTACCGCCAG
CAATGGCGGGACGCAACTGGTGGCGCAGCCGCTGCAATTCGCTCTGGTACAGGGTGTGACGAAGGGCAGTAACGGCAACC
TGTTGGATCTGGGTACCTACGGCACCACCACACTCGACGAAGTTCGGCAAATAATCTAA

Upstream 100 bases:

>100_bases
TGTCAGCCTCGCGCAGCTATCAGGCAAATATCGAAGTCCTGAATACCGTAAAAAGCATGATGCTTAAAACGCTGACATTA
GGCCAGTAAAGGAGGCGCGT

Downstream 100 bases:

>100_bases
GCCCTTACACTTATCAGGAGTCAGTCATGTCTTTTTCTCAAGCGGTTAGCGGCCTGAACGCTGCGGCCACCAACCTTGAT
GTTATCGGTAATAACATCGC

Product: flagellar basal body rod modification protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 232; Mature: 231

Protein sequence:

>232_residues
MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGA
ISGQIDNSQSLQATTLIGHGVMVPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGV
HTFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII

Sequences:

>Translated_232_residues
MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGA
ISGQIDNSQSLQATTLIGHGVMVPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGV
HTFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII
>Mature_231_residues
SIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTTQLAQISTVSGIEKLNTTLGAI
SGQIDNSQSLQATTLIGHGVMVPGTTILAGKGAEEGAVTSTTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGVH
TFTWDGKQTDGTTVPNGSYNIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII

Specific function: Required for flagellar hook formation. May act as a scaffolding protein

COG id: COG1843

COG function: function code N; Flagellar hook capping protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the flgD family

Homologues:

Organism=Escherichia coli, GI1787315, Length=232, Percent_Identity=82.7586206896552, Blast_Score=359, Evalue=1e-100,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): FLGD_SALTI (P0A1J0)

Other databases:

- EMBL:   AL627269
- EMBL:   AE014613
- RefSeq:   NP_455669.1
- RefSeq:   NP_805519.1
- ProteinModelPortal:   P0A1J0
- SMR:   P0A1J0
- PRIDE:   P0A1J0
- GeneID:   1071383
- GeneID:   1247619
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1744
- KEGG:   sty:STY1215
- HOGENOM:   HBG691812
- OMA:   GQIDVSQ
- ProtClustDB:   PRK06655
- BioCyc:   SENT209261:T1744-MONOMER
- BioCyc:   SENT220341:STY1215-MONOMER
- InterPro:   IPR005648

Pfam domain/function: PF03963 FlgD

EC number: NA

Molecular weight: Translated: 23988; Mature: 23857

Theoretical pI: Translated: 4.45; Mature: 4.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTT
CEEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
QLAQISTVSGIEKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTILAGKGAEEGAVT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEECCCCEEEECCCCCCCCEE
STTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSY
CCCCCCEEECCCCCCEEEEEECCCCCEEEEEEECHHHCCCEEEEECCCCCCCCCCCCCCE
NIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHC
>Mature Secondary Structure 
SIAVNMNDPTNTGVKTTTGSGSMTGSNAADLQSSFLTLLVAQLKNQDPTNPLQNNELTT
EEEEECCCCCCCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHH
QLAQISTVSGIEKLNTTLGAISGQIDNSQSLQATTLIGHGVMVPGTTILAGKGAEEGAVT
HHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCEECCCCEEEECCCCCCCCEE
STTPFGVELQQPADKVTATITDKDGRVVRTLEIGELRAGVHTFTWDGKQTDGTTVPNGSY
CCCCCCEEECCCCCCEEEEEECCCCCEEEEEEECHHHCCCEEEEECCCCCCCCCCCCCCE
NIAITASNGGTQLVAQPLQFALVQGVTKGSNGNLLDLGTYGTTTLDEVRQII
EEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504