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The map label for this gene is yggD [H]

Identifier: 194734962

GI number: 194734962

Start: 3139487

End: 3140008

Strand: Reverse

Name: yggD [H]

Synonym: SeSA_A3250

Alternate gene names: 194734962

Gene position: 3140008-3139487 (Counterclockwise)

Preceding gene: 194734320

Following gene: 194736290

Centisome position: 66.68

GC content: 47.89

Gene sequence:

>522_bases
ATGACGACGCTGACAGAAGACGATGTGCTTGAGCAACTGGATGCTCAAAATAATTTACTTTCGTTTATGACGACGGCACA
TAACATTTTGCTCCAGGGCATTAAGCGCTTTCTGCCGTCGCTGTTTGTCGATAATGATGAAGAAATTGTGGAATATGCAG
TGAAGCCGTTACTCGCCCAAAGCGGGCCGCTTGACGATATCGACGTTGCATTACGTCTGATTTATGCGCTGGGGAAAATG
GATAAATGGCTCTACGCTGACATCACCCATTTTTCTCAGTTTTATCAGTACCTGCATGAACAGGACGCGATTCCCGGTTT
TGCCGACGACATTACCTGGGACTTCATCAGTAACGTTAACTGTATTACCCGTAATGCGCCCTTATATGGCGCGCTGGAGT
CGATGAAGTTTGCCGACTTCGCCGCGTGGTCTGAGGTGCGCTTTACCGGTATGGTCAAAACGGCGATGGCGCTGGCGGTA
ACGACAATTTTAAAGGAATTAACGCCGTGGAAATCGCATTAA

Upstream 100 bases:

>100_bases
AATTATTTAGGGTATATACTCTGGGCTTTTCAGGATGAAGGACGGTGGCAAGTCCACGCCCACCTGTAGCTTGAAAGACG
ATGAGTATATCGGGACACAA

Downstream 100 bases:

>100_bases
CGGTTAATGGGCTGCACGTTGAAGCACATTATCATGATGATGAAATAGAGAAGGTTCACAAGCCCTTACTGCAACAACTG
GCTAAAATACATGCCGCTAA

Product: putative DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 172

Protein sequence:

>173_residues
MTTLTEDDVLEQLDAQNNLLSFMTTAHNILLQGIKRFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQFYQYLHEQDAIPGFADDITWDFISNVNCITRNAPLYGALESMKFADFAAWSEVRFTGMVKTAMALAV
TTILKELTPWKSH

Sequences:

>Translated_173_residues
MTTLTEDDVLEQLDAQNNLLSFMTTAHNILLQGIKRFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKM
DKWLYADITHFSQFYQYLHEQDAIPGFADDITWDFISNVNCITRNAPLYGALESMKFADFAAWSEVRFTGMVKTAMALAV
TTILKELTPWKSH
>Mature_172_residues
TTLTEDDVLEQLDAQNNLLSFMTTAHNILLQGIKRFLPSLFVDNDEEIVEYAVKPLLAQSGPLDDIDVALRLIYALGKMD
KWLYADITHFSQFYQYLHEQDAIPGFADDITWDFISNVNCITRNAPLYGALESMKFADFAAWSEVRFTGMVKTAMALAVT
TILKELTPWKSH

Specific function: Unknown

COG id: COG3722

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli mtlR [H]

Homologues:

Organism=Escherichia coli, GI1789297, Length=169, Percent_Identity=85.207100591716, Blast_Score=281, Evalue=1e-77,
Organism=Escherichia coli, GI1790029, Length=167, Percent_Identity=28.1437125748503, Blast_Score=68, Evalue=3e-13,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007761 [H]

Pfam domain/function: PF05068 MtlR [H]

EC number: NA

Molecular weight: Translated: 19658; Mature: 19526

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTLTEDDVLEQLDAQNNLLSFMTTAHNILLQGIKRFLPSLFVDNDEEIVEYAVKPLLAQ
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFYQYLHEQDAIPGFADDITWDFISNVN
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
CITRNAPLYGALESMKFADFAAWSEVRFTGMVKTAMALAVTTILKELTPWKSH
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
TTLTEDDVLEQLDAQNNLLSFMTTAHNILLQGIKRFLPSLFVDNDEEIVEYAVKPLLAQ
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
SGPLDDIDVALRLIYALGKMDKWLYADITHFSQFYQYLHEQDAIPGFADDITWDFISNVN
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCCC
CITRNAPLYGALESMKFADFAAWSEVRFTGMVKTAMALAVTTILKELTPWKSH
CEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 2546007 [H]