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The map label for this gene is ymdC [H]

Identifier: 194734767

GI number: 194734767

Start: 1191977

End: 1193281

Strand: Direct

Name: ymdC [H]

Synonym: SeSA_A1215

Alternate gene names: 194734767

Gene position: 1191977-1193281 (Clockwise)

Preceding gene: 194737747

Following gene: 194736643

Centisome position: 25.31

GC content: 52.95

Gene sequence:

>1305_bases
ATGGCGGCGCGGACGCTGGATGTGCAGTATTATATTTGGGAAGACGATATGTCCGGGCGGCTGCTCTTTTCGGTACTGCT
GTCGGCGGCGAAGCGCGGCGTTCATGTTCGTCTGCTGCTGGATGATAACAATACGCCTGGTCTGGATGATACGTTGCGCT
TGCTGGATAGCCATCCTAATATCGAAGTTCGTCTGTTTAATCCTTTCTCTTTTCGTACGCTACGCGCGCTGGGATATTTG
ACGGATTTTGCGCGGCTGAATCGGCGGATGCACAATAAAAGTTACACTGCCGACGGCGTAGTGACGCTGGTCGGTGGGCG
CAACATCGGCGATGCCTATTTCGGCGCTGGCGAGGAGCCGTTATTTTCCGATCTGGACGTGATGGCCATTGGCCCGGTGG
TCAATGATGTCGCCAATGATTTTGAACGTTACTGGCGCTGTAGTTCAGTGTCGACATTGCAGCAAGTATTATCCCTTTCT
GAGCAGGAACTGACGCAGCGTATCGAACTTCCCGAATCCTGGTATAACGATGAGATCACCCGCCGCTATCTGCATAAGCT
GGAAACCAGTCAGTTTATGGCGGATCTCGATCGCGGAACGTTGCCGCTGATTTGGGCAAAAACACGCTTGCTTAGCGATG
ACCCTTCTAAAGGCGAGGGGAAGGCGCAGCGCCATTCGCTTCTTCCGCAGCGATTATTTGACGTGATGGGCTCGCCGACG
GAGCGTATCGACATTATTTCCGCTTACTTTGTCCCTACGCGCGCAGGCGTGGCGCAGTTGCTTAATCTGGTCAGGAAGGG
CGTGAAGATCGCCATCTTAACTAACTCTCTGGCGGCCAACGATGTGGCGGTCGTTCACGCAGGGTACGCGCGCTGGCGAA
AGAAATTACTGCGCTATGGCGTGGAGCTCTACGAACTGAAACCGACCCGCGAACATGAAACCGCCGTACATGATCGCGGA
CTCACCGGGAACTCAGGTTCCAGCTTACATGCTAAAACGTTCAGTATTGATGGTAGTAAGGTGTTTATCGGATCGCTTAA
TTTTGATCCCCGTTCAACGCTTTTAAATACCGAAATGGGCTTTGTCATTGAAAGTGAGACGCTGGCGACGCTTATTCATA
AGCGTTTTACGCAGAGCCAACGCGATGCGGCCTGGCAGCTGCGGCTGGATCGCTGGGGACGAATTAACTGGATCGATCGT
CAGCAAGAAGAGGAAAAGGTGTTAAAGAAAGAACCCGCTACGCGTTTCTGGCAGCGAGTTCTGGTACGGTTGGCGGCAAT
TTTACCTGTGGAATGGTTGCTGTGA

Upstream 100 bases:

>100_bases
TGCCGTTGAACCGCTATGCGCGCGCCATCCCGGAGAGTGCGGCATTCTGGCGCTGGATAACAGTCTGGACGCTTTTGCCG
CCCGCTACCGCCTGACCGAA

Downstream 100 bases:

>100_bases
ACCCGCGCGCGGAAAACTACCCGATCGCGGCGCGGCTTTCTTGTTTTACCGGCGGTTTACCTGAAAAGAGAAATTTCAGG
AGCGGGATGCGTAAATGAAT

Product: phopholipase D

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 434; Mature: 433

Protein sequence:

>434_residues
MAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYL
TDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLS
EQELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPT
ERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRG
LTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDR
QQEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL

Sequences:

>Translated_434_residues
MAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYL
TDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLS
EQELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPT
ERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRG
LTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDR
QQEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL
>Mature_433_residues
AARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPNIEVRLFNPFSFRTLRALGYLT
DFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEEPLFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSE
QELTQRIELPESWYNDEITRRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPTE
RIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYGVELYELKPTREHETAVHDRGL
TGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEMGFVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQ
QEEEKVLKKEPATRFWQRVLVRLAAILPVEWLL

Specific function: Unknown

COG id: COG1502

COG function: function code I; Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthases and related enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PLD phosphodiesterase domains [H]

Homologues:

Organism=Escherichia coli, GI87081826, Length=434, Percent_Identity=83.1797235023041, Blast_Score=735, Evalue=0.0,
Organism=Escherichia coli, GI1787007, Length=381, Percent_Identity=24.1469816272966, Blast_Score=69, Evalue=4e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001736 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 49529; Mature: 49398

Theoretical pI: Translated: 8.81; Mature: 8.81

Prosite motif: PS50035 PLD

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPN
CCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHCCCCC
IEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEEP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCCCCC
LFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEIT
CCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHCCHHHH
RRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPT
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
ERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYG
HHEEEEHEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCC
VELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEMG
CEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHEECCCCC
FVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQRV
EEECHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
LVRLAAILPVEWLL
HHHHHHHHHHHHCC
>Mature Secondary Structure 
AARTLDVQYYIWEDDMSGRLLFSVLLSAAKRGVHVRLLLDDNNTPGLDDTLRLLDSHPN
CCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEEEECCCCCCHHHHHHHHCCCCC
IEVRLFNPFSFRTLRALGYLTDFARLNRRMHNKSYTADGVVTLVGGRNIGDAYFGAGEEP
EEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCHHCCCCCCC
LFSDLDVMAIGPVVNDVANDFERYWRCSSVSTLQQVLSLSEQELTQRIELPESWYNDEIT
CCCCCCCEEECHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHCCCHHHCCHHHH
RRYLHKLETSQFMADLDRGTLPLIWAKTRLLSDDPSKGEGKAQRHSLLPQRLFDVMGSPT
HHHHHHHHHHHHHHHHCCCCEEEEEEHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH
ERIDIISAYFVPTRAGVAQLLNLVRKGVKIAILTNSLAANDVAVVHAGYARWRKKLLRYG
HHEEEEHEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCCCEEEEECCHHHHHHHHHHCC
VELYELKPTREHETAVHDRGLTGNSGSSLHAKTFSIDGSKVFIGSLNFDPRSTLLNTEMG
CEEEEECCCCCHHHHHHCCCCCCCCCCCEEEEEEEECCCEEEEEECCCCCHHHEECCCCC
FVIESETLATLIHKRFTQSQRDAAWQLRLDRWGRINWIDRQQEEEKVLKKEPATRFWQRV
EEECHHHHHHHHHHHHHHHHHCHHEEEECCCCCCCCCCCCCHHHHHHHHCCHHHHHHHHH
LVRLAAILPVEWLL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]