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The map label for this gene is 194734723

Identifier: 194734723

GI number: 194734723

Start: 316294

End: 316836

Strand: Direct

Name: 194734723

Synonym: SeSA_A0305

Alternate gene names: NA

Gene position: 316294-316836 (Clockwise)

Preceding gene: 194735383

Following gene: 194736373

Centisome position: 6.72

GC content: 55.62

Gene sequence:

>543_bases
ATGGCTATCAACAATAGCGCGCAGAAATTCATCGCGCGCAACCGCGCGCCGCGCGTGCAGATTGAATATGACGTAGAGAT
TTACGGTTCCGAGAAAAAAATCGAGCTGCCGTTCGTGATGGCGGTGCTGGCCGATCTGGCCGGGAAACCGCGGGAAGAAC
TGCCGCCGGTGACGGATCGCAAATTCCTCGATATTGATATTGATAACTTCAATGAGCGCATGAAAGCCATTGCGCCGCGC
GTGGCGTTCGCTGTGCCGAATACGCTGACGGGTGAAGGTCAGTTGATGGTCGATATCACTCTGGAAAATATGGACGACTT
TTCGCCGGCACAGATTGCCCGCAAGGTGGACGCCCTGAACCAGTTACTGGAAGCCCGCACCCAACTGGCGAACCTCCAGA
CCTACATGGATGGCAAGGCCGGGGCGGAAAATCTGGTCAATAAACTGTTGCAGGACCCGACCCTGCTGAAAACGCTGGCG
AATGCGCCGAAACCGGCCGCTACCCAGCAAGGTGTGTCAGCGGATAATGAATCAGCGGAATAA

Upstream 100 bases:

>100_bases
AAAGAGATTATAAAAAAACTCTCTGAGTATGATTTTTAAACTGTGCCGTTGCACCGCTATCCGGGCGGTCGTCGGTAGAT
TGATAAGGAAATGAAAGAGT

Downstream 100 bases:

>100_bases
CGTCGAATTTTTAAGGAATTTTCATGGCAAACAGTAATATGCAGGCAACCGACGCGGTTGCTCAGGATACCGTCTCCGCA
TCCGGTGAATTTGATGCGTT

Product: type VI secretion protein, family protein

Products: NA

Alternate protein names: T6ss S; Type VI Secretion Protein Family; Conserved Protein; Cytoplasmic Protein SciH; Cytoplasmic Protein; Type VI Secretion System Protein; Protein ImpB; Type VI Secretion; Type VI Secretion System Core Protein; Type VI Secretion System Protein ImpB

Number of amino acids: Translated: 180; Mature: 179

Protein sequence:

>180_residues
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKPAATQQGVSADNESAE

Sequences:

>Translated_180_residues
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPR
VAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLA
NAPKPAATQQGVSADNESAE
>Mature_179_residues
AINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDRKFLDIDIDNFNERMKAIAPRV
AFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALNQLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLAN
APKPAATQQGVSADNESAE

Specific function: Unknown

COG id: COG3516

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19824; Mature: 19693

Theoretical pI: Translated: 4.54; Mature: 4.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDR
CCCCHHHHHHHHHCCCCEEEEEEEEEEECCCCEECHHHHHHHHHHHCCCCHHHCCCCCCC
KFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALN
EEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLANAPKPAATQQGVSADNESAE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCCCCCC
>Mature Secondary Structure 
AINNSAQKFIARNRAPRVQIEYDVEIYGSEKKIELPFVMAVLADLAGKPREELPPVTDR
CCCHHHHHHHHHCCCCEEEEEEEEEEECCCCEECHHHHHHHHHHHCCCCHHHCCCCCCC
KFLDIDIDNFNERMKAIAPRVAFAVPNTLTGEGQLMVDITLENMDDFSPAQIARKVDALN
EEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCEEEEEEEECCCCCCCHHHHHHHHHHHH
QLLEARTQLANLQTYMDGKAGAENLVNKLLQDPTLLKTLANAPKPAATQQGVSADNESAE
HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHCCCCCCCHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA