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The map label for this gene is ygiD [H]

Identifier: 194734625

GI number: 194734625

Start: 3258393

End: 3259181

Strand: Reverse

Name: ygiD [H]

Synonym: SeSA_A3375

Alternate gene names: 194734625

Gene position: 3259181-3258393 (Counterclockwise)

Preceding gene: 194735398

Following gene: 194734725

Centisome position: 69.21

GC content: 56.53

Gene sequence:

>789_bases
ATGTCTTTAACGTGTATGCCAGCATTGTTTTTGGGGCATGGCAGCCCGATGAACGTGCTGGACGATAACGATTATACCCG
CGCCTGGCGGCGATTGGGGGAAGCCCTGCCTCGACCACAGGCGATAGTGGTGGTGTCGGCGCACTGGTATACCCGCGGGA
CGGGCGTCACAGCGATGGAAAGGCCGCAAACTCTCCATGATTTTGGCGGTTTTCCGCAGGCGCTGTATGACACGCATTAT
CCGGCCCCTGGATCGCCTGCGCTGGCGCAGCGTTTGGTTGAACTGTTGGCTCCCGTTCCCGTCGCGCTCGATAAAGAAGC
GTGGGGATTTGATCACGGCTCCTGGGGCGTATTGATCAAGATGTACCCGAATGCGGATATCCCGATGGTGCAGCTTAGTG
TTGATAGTACCAAACCGGCGGCATGGCATTTTGAGGTGGGTCGTAAGCTGGCGACGCTGCGTGACGAAGGCGTGATGCTG
GTGGCCAGCGGGAATGTGGTTCATAACCTGCGGACTGTGCGTTGGCACGGTGACAATATACCGTATCCCTGGGCGGCGTC
ATTTAATGACTTTGTTAAAGCCAATCTGACGTGGCAGGGGCCGGTAGAACAGCACCCGCTGGTGAATTATCTGCAACATG
AAGGGGGGGTCTTATCGAACCCGACGCCGGAGCACTTTTTACCTTTGCTATATGTACTTGGCGCCTGGGACGGCAAGGAA
CCTATCACCATCCCGGTCGACGGTATTGAGATGGGCAGTATAAGTATGTTGTCGGTGCAGGTGGGGTAG

Upstream 100 bases:

>100_bases
AAAATAACTGATGATCTTCATCATAGTTATCTGAGTTCTTCCTCTGTGAAGAAAGCGTATGGTGATGTTAACAAAATGTC
TTTCCTGTAAGGATAACATC

Downstream 100 bases:

>100_bases
GCCGGATAAGGCGCGGAATGGTTGCCCGATGGCGCTACGCGCATCGGGCTTACAGGAGAATCTATCCTTCGACAAAAATA
TGCGGATAGAAACGGGAGAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHY
PAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVML
VASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGVLSNPTPEHFLPLLYVLGAWDGKE
PITIPVDGIEMGSISMLSVQVG

Sequences:

>Translated_262_residues
MSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHY
PAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVML
VASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGVLSNPTPEHFLPLLYVLGAWDGKE
PITIPVDGIEMGSISMLSVQVG
>Mature_261_residues
SLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAMERPQTLHDFGGFPQALYDTHYP
APGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIKMYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVMLV
ASGNVVHNLRTVRWHGDNIPYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGVLSNPTPEHFLPLLYVLGAWDGKEP
ITIPVDGIEMGSISMLSVQVG

Specific function: Unknown

COG id: COG3384

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the DODA-type extradiol aromatic ring- opening dioxygenase family [H]

Homologues:

Organism=Escherichia coli, GI226510974, Length=262, Percent_Identity=87.0229007633588, Blast_Score=483, Evalue=1e-138,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014436
- InterPro:   IPR004183 [H]

Pfam domain/function: PF02900 LigB [H]

EC number: NA

Molecular weight: Translated: 28890; Mature: 28759

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAME
CCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHC
RPQTLHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIK
CCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEE
MYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNI
ECCCCCCCEEEEEECCCCCCEEEHHHHHHEEEECCCCEEEEECCCEEEEEEEEEECCCCC
PYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGVLSNPTPEHFLPLLYVLGAWDGKE
CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
PITIPVDGIEMGSISMLSVQVG
CEEEEECCCEECCEEEEEEEEC
>Mature Secondary Structure 
SLTCMPALFLGHGSPMNVLDDNDYTRAWRRLGEALPRPQAIVVVSAHWYTRGTGVTAME
CCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEEEEECCCCCCHHC
RPQTLHDFGGFPQALYDTHYPAPGSPALAQRLVELLAPVPVALDKEAWGFDHGSWGVLIK
CCCHHHHCCCCCHHHHCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCCCEEEEE
MYPNADIPMVQLSVDSTKPAAWHFEVGRKLATLRDEGVMLVASGNVVHNLRTVRWHGDNI
ECCCCCCCEEEEEECCCCCCEEEHHHHHHEEEECCCCEEEEECCCEEEEEEEEEECCCCC
PYPWAASFNDFVKANLTWQGPVEQHPLVNYLQHEGGVLSNPTPEHFLPLLYVLGAWDGKE
CCCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCCC
PITIPVDGIEMGSISMLSVQVG
CEEEEECCCEECCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1314093; 9278503 [H]