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The map label for this gene is hcp1 [H]

Identifier: 194734344

GI number: 194734344

Start: 319255

End: 319740

Strand: Direct

Name: hcp1 [H]

Synonym: SeSA_A0308

Alternate gene names: 194734344

Gene position: 319255-319740 (Clockwise)

Preceding gene: 194735722

Following gene: 194735014

Centisome position: 6.78

GC content: 52.67

Gene sequence:

>486_bases
ATGGCTTATGACATTTTTTTGAAAATTGACGGCATTGATGGCGAGTCAATGGATGACAAACACAAAAATGAAATTGAAGT
ACTGAGCTGGCGCTGGAATATCCATCAGGAATCCACCATGCACGCCGGTAGCGGCCTCGGCTCCGGTAAGGTCTCCGTCA
CCAACCTGGATTTTGATCACTATATCGACCGCGCCAGCCCGAACCTGTTCAAATACTGCGCCTCCGGCAAGCACATTCCG
CAGGCCATTCTGGTTATGCGTAAGGCTGGCGGCAATCCGCTGGAGTACCTCAAGTATACCTTCACCGACCTGATTGTCGC
CGTGGTTTCCCCGAGCGGCAGCCACAATGGTGAAATCGCCTCCCGTGAAACGGTAGAGCTTTCTTTCAGCACCGTGAAGC
AGGAATACGTGGTGCAGAACCAGCAGGGCGGCAGCGGCGGCACTATCACCGCAGGTTACGACTTCAAGGCGAACAAAGAA
ATTTAA

Upstream 100 bases:

>100_bases
TTATTGGAGAAGGATTCTGTACGGCAATGATTTATCTATAAACAAAAAGATATAGATAAAATCAGGTTTATTTTAAGTAA
AACTTAATAAGGATATAAAA

Downstream 100 bases:

>100_bases
CGGCTGTTTTTCCGGCCAGATGTTATGTCTGGCTGGTTTTATTGTTTTGATTTTAAAGGAATTTACAGTGAATAAATGGC
GTAACCCACTCGGTGGTTAT

Product: hemolysin-coregulated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHNGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I

Sequences:

>Translated_161_residues
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIP
QAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHNGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKE
I
>Mature_160_residues
AYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDHYIDRASPNLFKYCASGKHIPQ
AILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHNGEIASRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17732; Mature: 17601

Theoretical pI: Translated: 5.92; Mature: 5.92

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDH
CEEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHH
YIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHNGEIA
HHCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCC
SRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI
CCEEEEEHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCC
>Mature Secondary Structure 
AYDIFLKIDGIDGESMDDKHKNEIEVLSWRWNIHQESTMHAGSGLGSGKVSVTNLDFDH
EEEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHH
YIDRASPNLFKYCASGKHIPQAILVMRKAGGNPLEYLKYTFTDLIVAVVSPSGSHNGEIA
HHCCCCCHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHEEEEECCCCCCCCCCC
SRETVELSFSTVKQEYVVQNQQGGSGGTITAGYDFKANKEI
CCEEEEEHHHHHHHHHHEECCCCCCCCEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]