Click here to switch to the map view.

The map label for this gene is yraR [H]

Identifier: 194734097

GI number: 194734097

Start: 3338828

End: 3339463

Strand: Reverse

Name: yraR [H]

Synonym: SeSA_A3457

Alternate gene names: 194734097

Gene position: 3339463-3338828 (Counterclockwise)

Preceding gene: 194737964

Following gene: 194735040

Centisome position: 70.92

GC content: 58.02

Gene sequence:

>636_bases
ATGAGTCAGGTACTGATTACCGGCGCGACCGGACTGGTCGGCGGACATCTGCTGAGAATGTTAATCAACACGCCGCAGGT
GAGCGCTATCGCCGCGCCGACGCGTCGTCCGCTGACGGATATTGTCGGCGTTTATAACCCTCACGATCCGCAGCTTACCG
ACGCGTTAGCTCAGGTGACCGACCCGGTAGATATTGTTTTTTGCTGCCTGGGCACGACCCGGCGTGAAGCGGGAAGTAAA
GCGGCGTTTATTCATGCGGATTATACGCTGGTGGTTGATACCGCGCTGACCGGGCGTCGGCTGGGCGCGCAGCACATGTT
GGTGGTCAGCGCAATGGGAGCAAACGCGCACTCTCCGTTTTTCTACAATCGGGTGAAAGGAGAAATGGAGGAGGCGTTAA
TCGCGCAAAATTGGCCTCGTTTGACGATTGCCCGGCCTTCTATGCTGCTCGGCGACAGAACAACGCGGCGGGTGAATGAA
ACGCTTTTCGCTCCGCTATTTCGGCTGTTGCCAGGAAACTGGAAATCGATTGATGCGCGGGATGTGGCGCGGGCCATGCT
GGCGGAAGCGCTGGCGCCAGCACAAGAAGGCGTGACGATTCTGACCTCATCGCAACTGCGGGAAAAAGCGGAGTAG

Upstream 100 bases:

>100_bases
AGGCAAATTTTCCACAATGATGGATACTTACCTCGTAGACTATTAAGCCTGGTCGATAGGGCCGAGAGTGCAAGGTGGAC
AAATCTGTAAAGGAGCGAGG

Downstream 100 bases:

>100_bases
CGAAGCCGGATGATTTACCGGATGGCGACGCGGTTTACACATTTTTATCGCCACCCGGCACACCGGTTACTTAATATACG
TAAAGGCGGTGGTTACGCGT

Product: NAD dependent epimerase/dehydratase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 211; Mature: 210

Protein sequence:

>211_residues
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSK
AAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNE
TLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE

Sequences:

>Translated_211_residues
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSK
AAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNE
TLFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE
>Mature_210_residues
SQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVTDPVDIVFCCLGTTRREAGSKA
AFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPFFYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNET
LFAPLFRLLPGNWKSIDARDVARAMLAEALAPAQEGVTILTSSQLREKAE

Specific function: Unknown

COG id: COG0702

COG function: function code MG; Predicted nucleoside-diphosphate-sugar epimerases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YER004W [H]

Homologues:

Organism=Homo sapiens, GI148728172, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728168, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728164, Length=213, Percent_Identity=30.9859154929577, Blast_Score=101, Evalue=5e-22,
Organism=Homo sapiens, GI148728166, Length=213, Percent_Identity=30.9859154929577, Blast_Score=100, Evalue=8e-22,
Organism=Escherichia coli, GI87082218, Length=211, Percent_Identity=88.1516587677725, Blast_Score=393, Evalue=1e-111,
Organism=Caenorhabditis elegans, GI71983631, Length=218, Percent_Identity=30.7339449541284, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6320840, Length=158, Percent_Identity=33.5443037974684, Blast_Score=72, Evalue=6e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000534 [H]

Pfam domain/function: PF01118 Semialdhyde_dh [H]

EC number: NA

Molecular weight: Translated: 22912; Mature: 22781

Theoretical pI: Translated: 8.75; Mature: 8.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVT
CCCEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHC
DPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARAMLAEALAPAQEGVTILTSSQLREKAE
HHHHHHHHHHHCHHHCCEEEEECHHHHHHCC
>Mature Secondary Structure 
SQVLITGATGLVGGHLLRMLINTPQVSAIAAPTRRPLTDIVGVYNPHDPQLTDALAQVT
CCEEEECCCHHHHHHHHHHHHCCCCCCEECCCCCCCHHHHHCCCCCCCCHHHHHHHHHC
DPVDIVFCCLGTTRREAGSKAAFIHADYTLVVDTALTGRRLGAQHMLVVSAMGANAHSPF
CCHHHHHHHCCCHHHHCCCCEEEEECCEEEEEECCCCCCCCCCHHEEEEEECCCCCCCCH
FYNRVKGEMEEALIAQNWPRLTIARPSMLLGDRTTRRVNETLFAPLFRLLPGNWKSIDAR
HHHHHHHHHHHHHHHCCCCEEEEECCCHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCHH
DVARAMLAEALAPAQEGVTILTSSQLREKAE
HHHHHHHHHHHCHHHCCEEEEECHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]