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The map label for this gene is ymdA

Identifier: 194734018

GI number: 194734018

Start: 1190913

End: 1191233

Strand: Direct

Name: ymdA

Synonym: SeSA_A1213

Alternate gene names: 194734018

Gene position: 1190913-1191233 (Clockwise)

Preceding gene: 194734505

Following gene: 194737747

Centisome position: 25.29

GC content: 47.98

Gene sequence:

>321_bases
ATGTCCGTAATCAAGAAAAATATCCCTGCCATAGGCCTGTGTATCTGCGCTTTTTTTATCCATTCTGCGGTAGGGCAACA
AACGGTACAGGGCGGCGTTATCCATTTTCGCGGCGCGATTGTTGAGCCACTGTGCGATATTTCTACTCACGCCGAAAATA
TTGATTTAACCTGCCTACGCGAAGGTAAAAAGCAAATGCACCGGATTGACCTTCGGCAGGCATCTGGATTACCGCAGGAT
ATTCAGTCCATTGCGACGGTGCGGCTGCATTATCTCGATGCGCAAAAAAGCCTGGCGGTGATGAATATTGAGTACCGTTA
A

Upstream 100 bases:

>100_bases
CCTGGGTATTAAAGAGGCGATAAAAGCGTCTCATCGTCTCGGCATGTCGCTAAAAGGTAACGCCGAACCCTCGAGGATGA
CTAATCATTGAGGAGTTAAC

Downstream 100 bases:

>100_bases
CGGCGGTGTCATAGATATAAAAAGAGCGACTCTGTTGAAAGCCCTGCTGTACACTTTGCAGATAAGGTGAGACAAAGGGG
GGGTTATGACATCACGTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 106; Mature: 105

Protein sequence:

>106_residues
MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPLCDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQD
IQSIATVRLHYLDAQKSLAVMNIEYR

Sequences:

>Translated_106_residues
MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPLCDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQD
IQSIATVRLHYLDAQKSLAVMNIEYR
>Mature_105_residues
SVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPLCDISTHAENIDLTCLREGKKQMHRIDLRQASGLPQDI
QSIATVRLHYLDAQKSLAVMNIEYR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To the N-terminal of the fimA/papA family of fimbria proteins

Homologues:

Organism=Escherichia coli, GI1787281, Length=90, Percent_Identity=46.6666666666667, Blast_Score=80, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): YMDA_SALTI (P0A1T1)

Other databases:

- EMBL:   AL627269
- EMBL:   AE014613
- RefSeq:   NP_455640.1
- RefSeq:   NP_805548.1
- GeneID:   1071414
- GeneID:   1247589
- GenomeReviews:   AE014613_GR
- GenomeReviews:   AL513382_GR
- KEGG:   stt:t1774
- KEGG:   sty:STY1183
- HOGENOM:   HBG467747
- OMA:   PRKTYSS
- ProtClustDB:   CLSK894078
- BioCyc:   SENT209261:T1774-MONOMER
- BioCyc:   SENT220341:STY1183-MONOMER

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 11756; Mature: 11625

Theoretical pI: Translated: 8.35; Mature: 8.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPLCDISTHAENIDLTCLR
CCCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCCHHHHH
EGKKQMHRIDLRQASGLPQDIQSIATVRLHYLDAQKSLAVMNIEYR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC
>Mature Secondary Structure 
SVIKKNIPAIGLCICAFFIHSAVGQQTVQGGVIHFRGAIVEPLCDISTHAENIDLTCLR
CCCHHCCCHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHCCCCCCCCCCHHHHH
EGKKQMHRIDLRQASGLPQDIQSIATVRLHYLDAQKSLAVMNIEYR
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11677608; 12644504