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The map label for this gene is yjcF [C]

Identifier: 194333069

GI number: 194333069

Start: 234548

End: 235891

Strand: Reverse

Name: yjcF [C]

Synonym: Paes_0225

Alternate gene names: 194333069

Gene position: 235891-234548 (Counterclockwise)

Preceding gene: 194333070

Following gene: 194333068

Centisome position: 9.39

GC content: 51.56

Gene sequence:

>1344_bases
ATGAAAAAAATTCTTCTTCCTGCAACAATAGTCATGCTTTGCCAGTTTGGCCCCGCCTCTGTAAACGGGTATTGCGCCAA
CCAGGCACAGGTCAACCAGTTACGCTCCGATGTCGCGACATGGAACAGCTTGCGCAGTAAGGGCTCCGAACCGGTCATAG
ACCTCAATTATGCAAAACTGAACGATGCCAACCTCAACGATGCGGATCTGCACGATGCGTCGATGATCAAAGCCGGGCTC
AACGGAGCCGCTATCAACCGCTCAAATCTGAAGAACGCAAACCTTTATCTGGCAAAGCTCAAACGCGCAAACATCAAAGA
TGCCTCTCTCGAAGGAGCAAATCTCGTAAAAACGGATATGAGAAGCGCCTGCATGTCGCGCACAAACCTACGATCGGCAA
ATCTTGCCATGGCCGACTTGCGCTGGGTCATTCTCGATGAGGTGAACCTCAATAGCGCGTTCCTGGAAAAAGCGAAACTG
TTCGGGGCAACACTCAAAAGTGCAGACCTGAGAGGTGCTAATCTGAAAGGAGTAGAAATGCTCGGACAAGCCAACCTCAC
AGGAGCAAAGGTTTCCGTAAATACTATTTTGCCAAATGGGAAGCGCGCAACATCGCTCTGGGCATCCATACACGGAGCCC
GATTCATCAAAGAACCCGAAACTCCGGCTGTTGTCATGGACTACTCAGAGATCAGCCTTCCTGAAATAAACACGGTCGGA
ATTCCAGAAAAACCGAACGATTCCACCACTCCCGGCCCCCCTGCACTCAAGCCGCAAATCATACTGGAGCAGGATGTTCA
GGCATGGAATGCCATGCGCACGCAGCAACCGGAACTCAAGCCGGACATGGAAGAAGAAGACCTCAGCGATGCCCGCCTTG
AGGGAGCCGACCTGAAAGCCCTTGCAATGAACAATGCGACAATGGACGGAGCCGATATGGATAGTGCGGACTTTTCAGGC
TCCCAGCTTGCAAACACCTCATGGAAAAGAGCTGATCTGAAAAACGCAAACTTCCAGAACGCCGATCTGACAGGCGCAAA
CTTCGAAAATGCCTTCATGAGAGGAGCAAATCTCTCGAACGCCAATCTCACAGGAGCGCGTTTCTATGGAACAAGGGTTC
AGGACGCCAACATGCAGAATGCCGATATGCAGAAGGTCAATCTCTTCAACGCCGATCTGACAGGCGCCAACCTCTGCGGA
GCCAATCTGAAAAACGCACAGCTTATGGATACCATCCTCAACGGGGCACACATCTCAACATCGACAATCACCCCTTCGGG
AAAACCCGCCACACGAAGCTGGGCTGTACTTCGTGGGGCTCGATTCACTGACAACAAAGAGTAA

Upstream 100 bases:

>100_bases
TATCCGATCAAGAATATAGCGACTGTATGTTCCCAATCTCGAAAGAGGTTCTCTATATTACTATTCTATGTCTCGCTTCT
GAACTTCAAGCATCCGCATC

Downstream 100 bases:

>100_bases
TGAAGGTGACTTCGATAATCCTCAAAACGAATTTCTTATGGCAAACATTCTTGTTACGAGCTATTACAGCCGCTGGGATC
TGAAGGAGCACAAAGGCAGA

Product: pentapeptide repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 447; Mature: 447

Protein sequence:

>447_residues
MKKILLPATIVMLCQFGPASVNGYCANQAQVNQLRSDVATWNSLRSKGSEPVIDLNYAKLNDANLNDADLHDASMIKAGL
NGAAINRSNLKNANLYLAKLKRANIKDASLEGANLVKTDMRSACMSRTNLRSANLAMADLRWVILDEVNLNSAFLEKAKL
FGATLKSADLRGANLKGVEMLGQANLTGAKVSVNTILPNGKRATSLWASIHGARFIKEPETPAVVMDYSEISLPEINTVG
IPEKPNDSTTPGPPALKPQIILEQDVQAWNAMRTQQPELKPDMEEEDLSDARLEGADLKALAMNNATMDGADMDSADFSG
SQLANTSWKRADLKNANFQNADLTGANFENAFMRGANLSNANLTGARFYGTRVQDANMQNADMQKVNLFNADLTGANLCG
ANLKNAQLMDTILNGAHISTSTITPSGKPATRSWAVLRGARFTDNKE

Sequences:

>Translated_447_residues
MKKILLPATIVMLCQFGPASVNGYCANQAQVNQLRSDVATWNSLRSKGSEPVIDLNYAKLNDANLNDADLHDASMIKAGL
NGAAINRSNLKNANLYLAKLKRANIKDASLEGANLVKTDMRSACMSRTNLRSANLAMADLRWVILDEVNLNSAFLEKAKL
FGATLKSADLRGANLKGVEMLGQANLTGAKVSVNTILPNGKRATSLWASIHGARFIKEPETPAVVMDYSEISLPEINTVG
IPEKPNDSTTPGPPALKPQIILEQDVQAWNAMRTQQPELKPDMEEEDLSDARLEGADLKALAMNNATMDGADMDSADFSG
SQLANTSWKRADLKNANFQNADLTGANFENAFMRGANLSNANLTGARFYGTRVQDANMQNADMQKVNLFNADLTGANLCG
ANLKNAQLMDTILNGAHISTSTITPSGKPATRSWAVLRGARFTDNKE
>Mature_447_residues
MKKILLPATIVMLCQFGPASVNGYCANQAQVNQLRSDVATWNSLRSKGSEPVIDLNYAKLNDANLNDADLHDASMIKAGL
NGAAINRSNLKNANLYLAKLKRANIKDASLEGANLVKTDMRSACMSRTNLRSANLAMADLRWVILDEVNLNSAFLEKAKL
FGATLKSADLRGANLKGVEMLGQANLTGAKVSVNTILPNGKRATSLWASIHGARFIKEPETPAVVMDYSEISLPEINTVG
IPEKPNDSTTPGPPALKPQIILEQDVQAWNAMRTQQPELKPDMEEEDLSDARLEGADLKALAMNNATMDGADMDSADFSG
SQLANTSWKRADLKNANFQNADLTGANFENAFMRGANLSNANLTGARFYGTRVQDANMQNADMQKVNLFNADLTGANLCG
ANLKNAQLMDTILNGAHISTSTITPSGKPATRSWAVLRGARFTDNKE

Specific function: Unknown

COG id: COG1357

COG function: function code S; Uncharacterized low-complexity proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 5 pentapeptide repeat domains [H]

Homologues:

Organism=Drosophila melanogaster, GI221377802, Length=164, Percent_Identity=31.0975609756098, Blast_Score=66, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001646 [H]

Pfam domain/function: PF00805 Pentapeptide [H]

EC number: NA

Molecular weight: Translated: 48229; Mature: 48229

Theoretical pI: Translated: 7.39; Mature: 7.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKILLPATIVMLCQFGPASVNGYCANQAQVNQLRSDVATWNSLRSKGSEPVIDLNYAKL
CCCEEHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
NDANLNDADLHDASMIKAGLNGAAINRSNLKNANLYLAKLKRANIKDASLEGANLVKTDM
CCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHH
RSACMSRTNLRSANLAMADLRWVILDEVNLNSAFLEKAKLFGATLKSADLRGANLKGVEM
HHHHHHHCCCCCCCEEHHHEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LGQANLTGAKVSVNTILPNGKRATSLWASIHGARFIKEPETPAVVMDYSEISLPEINTVG
HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHCCCCCCCEEEEECCCCCCCCCCCCC
IPEKPNDSTTPGPPALKPQIILEQDVQAWNAMRTQQPELKPDMEEEDLSDARLEGADLKA
CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCEEE
LAMNNATMDGADMDSADFSGSQLANTSWKRADLKNANFQNADLTGANFENAFMRGANLSN
EEECCCCCCCCCCCCCCCCCCHHCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCC
ANLTGARFYGTRVQDANMQNADMQKVNLFNADLTGANLCGANLKNAQLMDTILNGAHIST
CCCCEEEEECCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
STITPSGKPATRSWAVLRGARFTDNKE
CEECCCCCCCCCCCHHHCCCCCCCCCC
>Mature Secondary Structure
MKKILLPATIVMLCQFGPASVNGYCANQAQVNQLRSDVATWNSLRSKGSEPVIDLNYAKL
CCCEEHHHHHHHHHCCCCCCCCCEECCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEC
NDANLNDADLHDASMIKAGLNGAAINRSNLKNANLYLAKLKRANIKDASLEGANLVKTDM
CCCCCCCCCCCHHHHHHHCCCCCEECCCCCCCCCEEEEEHHCCCCCCCCCCCCHHHHHHH
RSACMSRTNLRSANLAMADLRWVILDEVNLNSAFLEKAKLFGATLKSADLRGANLKGVEM
HHHHHHHCCCCCCCEEHHHEEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHH
LGQANLTGAKVSVNTILPNGKRATSLWASIHGARFIKEPETPAVVMDYSEISLPEINTVG
HCCCCCCCCEEEEEEECCCCCHHHHHHHHHHCHHHCCCCCCCEEEEECCCCCCCCCCCCC
IPEKPNDSTTPGPPALKPQIILEQDVQAWNAMRTQQPELKPDMEEEDLSDARLEGADLKA
CCCCCCCCCCCCCCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCEEE
LAMNNATMDGADMDSADFSGSQLANTSWKRADLKNANFQNADLTGANFENAFMRGANLSN
EEECCCCCCCCCCCCCCCCCCHHCCCCCCHHHCCCCCCCCCCCCCCCCHHHHHCCCCCCC
ANLTGARFYGTRVQDANMQNADMQKVNLFNADLTGANLCGANLKNAQLMDTILNGAHIST
CCCCEEEEECCEECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHCCCEEEE
STITPSGKPATRSWAVLRGARFTDNKE
CEECCCCCCCCCCCHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA