Definition Prosthecochloris aestuarii DSM 271 chromosome, complete genome.
Accession NC_011059
Length 2,512,923

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The map label for this gene is rbpE [H]

Identifier: 194332974

GI number: 194332974

Start: 133899

End: 134171

Strand: Reverse

Name: rbpE [H]

Synonym: Paes_0127

Alternate gene names: 194332974

Gene position: 134171-133899 (Counterclockwise)

Preceding gene: 194332978

Following gene: 194332970

Centisome position: 5.34

GC content: 45.79

Gene sequence:

>273_bases
ATGAACATTTACATTGGTAACCTGCCCTACAACATCACTGAAGACGACCTTCGTGAAGCCTTCAATGAATTCGGACAGGT
AGACAGCGCAAACATCATTATCGACAAGTTTTCCGGCCGCTCAAAAGGCTTCGGTTTTGTTGAAATGCCAAATGACGAAG
ATGCTGAAAAAGCAATCGACTCATTGAACGACACCGATTTTAATGGCCGCACCATCAAAGTCAACCAGGCAAGACCCCGC
GAAGAACGTCCTGTACGCAGAGATCGTTATTGA

Upstream 100 bases:

>100_bases
TATTAGTCAATGGTTGACTGACCGCATTCAAATAATTTTGTGCTTTTGGTTGTTTGTCTGCGCTTCTTTCTATCAAAGCA
CATGTTTCTACGAGATCAAC

Downstream 100 bases:

>100_bases
TTCAAGGGAGATTGTAAGGAAGAATCTGACAAGCAGTCCGGTATAACCGGGCTGTTTTTTTTTACAGAAAACGGCTCCTG
CAGAAGCCTCGGCGGCACAC

Product: RNP-1 like RNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 90; Mature: 90

Protein sequence:

>90_residues
MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAIDSLNDTDFNGRTIKVNQARPR
EERPVRRDRY

Sequences:

>Translated_90_residues
MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAIDSLNDTDFNGRTIKVNQARPR
EERPVRRDRY
>Mature_90_residues
MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAIDSLNDTDFNGRTIKVNQARPR
EERPVRRDRY

Specific function: Unknown

COG id: COG0724

COG function: function code R; RNA-binding proteins (RRM domain)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 RRM (RNA recognition motif) domain [H]

Homologues:

Organism=Homo sapiens, GI38201714, Length=81, Percent_Identity=45.679012345679, Blast_Score=79, Evalue=5e-16,
Organism=Homo sapiens, GI35493811, Length=80, Percent_Identity=42.5, Blast_Score=77, Evalue=2e-15,
Organism=Homo sapiens, GI4757926, Length=80, Percent_Identity=42.5, Blast_Score=77, Evalue=2e-15,
Organism=Homo sapiens, GI283945537, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI283945529, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI115511032, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=4e-14,
Organism=Homo sapiens, GI221316769, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI221316771, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI221316767, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=5e-14,
Organism=Homo sapiens, GI221316773, Length=78, Percent_Identity=41.025641025641, Blast_Score=73, Evalue=6e-14,
Organism=Homo sapiens, GI116734696, Length=80, Percent_Identity=40, Blast_Score=71, Evalue=1e-13,
Organism=Homo sapiens, GI49355761, Length=78, Percent_Identity=39.7435897435897, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI116734694, Length=80, Percent_Identity=40, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI116734698, Length=80, Percent_Identity=40, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI221316765, Length=78, Percent_Identity=41.025641025641, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI49355765, Length=78, Percent_Identity=39.7435897435897, Blast_Score=71, Evalue=2e-13,
Organism=Homo sapiens, GI14149675, Length=82, Percent_Identity=35.3658536585366, Blast_Score=69, Evalue=6e-13,
Organism=Homo sapiens, GI45238849, Length=88, Percent_Identity=38.6363636363636, Blast_Score=69, Evalue=9e-13,
Organism=Homo sapiens, GI4557493, Length=82, Percent_Identity=35.3658536585366, Blast_Score=69, Evalue=1e-12,
Organism=Homo sapiens, GI46367787, Length=82, Percent_Identity=40.2439024390244, Blast_Score=67, Evalue=3e-12,
Organism=Homo sapiens, GI188219591, Length=83, Percent_Identity=36.144578313253, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI188219593, Length=83, Percent_Identity=36.144578313253, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI185135971, Length=82, Percent_Identity=37.8048780487805, Blast_Score=65, Evalue=1e-11,
Organism=Homo sapiens, GI4507499, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI4504715, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI208431833, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI291084655, Length=82, Percent_Identity=37.8048780487805, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI208431836, Length=88, Percent_Identity=36.3636363636364, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI77695912, Length=83, Percent_Identity=36.144578313253, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI45439316, Length=91, Percent_Identity=37.3626373626374, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI5174637, Length=91, Percent_Identity=37.3626373626374, Blast_Score=62, Evalue=7e-11,
Organism=Homo sapiens, GI303305009, Length=91, Percent_Identity=37.3626373626374, Blast_Score=62, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17508587, Length=80, Percent_Identity=42.5, Blast_Score=79, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17539498, Length=92, Percent_Identity=42.3913043478261, Blast_Score=74, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17508585, Length=77, Percent_Identity=36.3636363636364, Blast_Score=73, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17508567, Length=77, Percent_Identity=38.961038961039, Blast_Score=72, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17532863, Length=82, Percent_Identity=36.5853658536585, Blast_Score=70, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17537143, Length=77, Percent_Identity=44.1558441558442, Blast_Score=69, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17553656, Length=76, Percent_Identity=36.8421052631579, Blast_Score=68, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI32564504, Length=86, Percent_Identity=38.3720930232558, Blast_Score=67, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI32564506, Length=87, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17531965, Length=87, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17531963, Length=87, Percent_Identity=37.9310344827586, Blast_Score=66, Evalue=4e-12,
Organism=Caenorhabditis elegans, GI17554788, Length=69, Percent_Identity=43.4782608695652, Blast_Score=62, Evalue=5e-11,
Organism=Saccharomyces cerevisiae, GI6324312, Length=80, Percent_Identity=36.25, Blast_Score=67, Evalue=6e-13,
Organism=Saccharomyces cerevisiae, GI6321013, Length=82, Percent_Identity=39.0243902439024, Blast_Score=64, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24582417, Length=80, Percent_Identity=45, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI45550943, Length=80, Percent_Identity=45, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24582419, Length=80, Percent_Identity=45, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24582423, Length=80, Percent_Identity=45, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24582421, Length=80, Percent_Identity=45, Blast_Score=80, Evalue=4e-16,
Organism=Drosophila melanogaster, GI19920866, Length=80, Percent_Identity=45, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24582412, Length=80, Percent_Identity=45, Blast_Score=79, Evalue=4e-16,
Organism=Drosophila melanogaster, GI221330653, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19549688, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19549694, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI221330652, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI62471589, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19549692, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI19549690, Length=81, Percent_Identity=44.4444444444444, Blast_Score=77, Evalue=2e-15,
Organism=Drosophila melanogaster, GI17137710, Length=82, Percent_Identity=40.2439024390244, Blast_Score=71, Evalue=1e-13,
Organism=Drosophila melanogaster, GI17647301, Length=77, Percent_Identity=44.1558441558442, Blast_Score=67, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24661759, Length=82, Percent_Identity=40.2439024390244, Blast_Score=65, Evalue=8e-12,
Organism=Drosophila melanogaster, GI24583879, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24583875, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24583873, Length=83, Percent_Identity=37.3493975903614, Blast_Score=64, Evalue=3e-11,
Organism=Drosophila melanogaster, GI281364913, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24583877, Length=83, Percent_Identity=37.3493975903614, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012677
- InterPro:   IPR000504
- InterPro:   IPR015465 [H]

Pfam domain/function: PF00076 RRM_1 [H]

EC number: NA

Molecular weight: Translated: 10418; Mature: 10418

Theoretical pI: Translated: 4.43; Mature: 4.43

Prosite motif: PS50102 RRM

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAID
CEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHH
SLNDTDFNGRTIKVNQARPREERPVRRDRY
CCCCCCCCCEEEEECCCCCCCCCCCCCCCC
>Mature Secondary Structure
MNIYIGNLPYNITEDDLREAFNEFGQVDSANIIIDKFSGRSKGFGFVEMPNDEDAEKAID
CEEEECCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCHHHHHH
SLNDTDFNGRTIKVNQARPREERPVRRDRY
CCCCCCCCCEEEEECCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11759840 [H]