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The map label for this gene is atpD1 [H]

Identifier: 194332903

GI number: 194332903

Start: 53215

End: 54603

Strand: Reverse

Name: atpD1 [H]

Synonym: Paes_0050

Alternate gene names: 194332903

Gene position: 54603-53215 (Counterclockwise)

Preceding gene: 194332907

Following gene: 194332902

Centisome position: 2.17

GC content: 53.28

Gene sequence:

>1389_bases
ATGCAAGAAGGTAAGATATCTCAAATCATCGGCCCTGTCGTTGATGTTGATTTCCCGGAAGGACAGCTTCCGTCAATTCT
GGACGCACTTACAGTTGCTCGTCCTGACGGATCAAAACTGGTTCTTGAAACCCAGCAGCACCTTGGCGACGAAAGGGTCC
GCGCGATCGCCATGGAAGGTACCGAAGGCCTCGTAAGAGGAATCCCGGTTATCAACACAGGAAAACCGATCCAGGTTCCT
GTCGGCCAGAACGTACTCGGCCGCATGCTCAACGTCGTCGGAGAACCGATCGACGGCATGGGCGACATCGACAGCGATAC
CACCCGCTCGATCCACAGGAGCGCCCCGAAATTTGACGAACTCTCCACAAAATCAGAGATGTTCGAGACAGGCATCAAAG
TCATCGATCTTCTTGAGCCATATTCAAGAGGCGGTAAAACAGGTTTGTTCGGTGGTGCCGGTGTCGGTAAAACCGTTCTT
ATCATGGAGCTCATCAACAACATCGCCAAACAGCAGTCCGGATACTCCGTCTTTGCCGGTGTCGGTGAGCGTACCCGTGA
AGGCAACGACCTCTGGGAAGAGATGAAGGAGTCCGGCGTTATCGACAAAACCGCGCTCGTGTTCGGTCAGATGAACGAGC
CTCCCGGCGCACGTGCCCGCGTTGCATTGACCGGTCTTTCTATCGCGGAGTACTTCCGTGATGTAGAACACCGCGACGTT
CTGCTCTTCGTTGACAATATCTTCCGCTTTACCCAGGCAGGTTCAGAGGTTTCCGCACTTCTCGGCCGTATGCCGAGCGC
TGTAGGGTACCAGCCGACCCTCGGTACCGAGATGGGTGAACTCCAGGACAGAATTGTCTCCACCAAAGACGGTTCGGTTA
CCTCTGTACAGGCTATCTATGTCCCTGCAGATGACCTGACCGATCCGGCCCCGGCCACGACATTTACTCACCTTGACGCG
ACGACCGTACTTTCCCGTTCGATCGCCGAGCTTGGTATCTACCCTGCTGTTGATCCCCTGGATTCAACCTCGCGAATTCT
CGACCCGAACATTGTCGGCGATGACCATTACGATACCGCACAGGCGGTCAAAGAGATCCTGCAGCGCTATAAAGATCTTC
AGGATATCATCGCCATTCTCGGTATGGATGAACTGAGCGATGAGGACAAACTTGTCGTTTCGCGTGCCAGAAAAATTCAG
CGATTCCTTTCACAGCCGTTCTTCGTTGCCGAAGCCTTTACCGGCCTTTCCGGCAAATACGTCAAACTCGAAGACACCAT
TAAAGGCTTCAAGGAAATCATCGCAGGCCGCCACGATAATCTTCCTGAAAATGCCTTCTACCTGGTCGGCACCATTGAGG
AAGCGATCGAAAAAGCGAAAAAACTGTAA

Upstream 100 bases:

>100_bases
CTCAACAAGAAAAAAATCGAAATCAGACACCAGATAACAACCGGTGTCCGCAGCAAAAAGTTTTGATTGCTAACAACAAA
TCCTATCAACACTGTCTAAT

Downstream 100 bases:

>100_bases
ACTCATTCGACTATTATGGCCAGTTCCGACAAAGCCTTTGAAATCGAAATTGTCACACCGCAGAAGCAGTTTTTCTCCGG
TGAAGTGACAAGCGTGATTG

Product: F0F1 ATP synthase subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta 1; F-ATPase subunit beta 1 [H]

Number of amino acids: Translated: 462; Mature: 462

Protein sequence:

>462_residues
MQEGKISQIIGPVVDVDFPEGQLPSILDALTVARPDGSKLVLETQQHLGDERVRAIAMEGTEGLVRGIPVINTGKPIQVP
VGQNVLGRMLNVVGEPIDGMGDIDSDTTRSIHRSAPKFDELSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGYSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDVEHRDV
LLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTKDGSVTSVQAIYVPADDLTDPAPATTFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTAQAVKEILQRYKDLQDIIAILGMDELSDEDKLVVSRARKIQ
RFLSQPFFVAEAFTGLSGKYVKLEDTIKGFKEIIAGRHDNLPENAFYLVGTIEEAIEKAKKL

Sequences:

>Translated_462_residues
MQEGKISQIIGPVVDVDFPEGQLPSILDALTVARPDGSKLVLETQQHLGDERVRAIAMEGTEGLVRGIPVINTGKPIQVP
VGQNVLGRMLNVVGEPIDGMGDIDSDTTRSIHRSAPKFDELSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGYSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDVEHRDV
LLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTKDGSVTSVQAIYVPADDLTDPAPATTFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTAQAVKEILQRYKDLQDIIAILGMDELSDEDKLVVSRARKIQ
RFLSQPFFVAEAFTGLSGKYVKLEDTIKGFKEIIAGRHDNLPENAFYLVGTIEEAIEKAKKL
>Mature_462_residues
MQEGKISQIIGPVVDVDFPEGQLPSILDALTVARPDGSKLVLETQQHLGDERVRAIAMEGTEGLVRGIPVINTGKPIQVP
VGQNVLGRMLNVVGEPIDGMGDIDSDTTRSIHRSAPKFDELSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVL
IMELINNIAKQQSGYSVFAGVGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDVEHRDV
LLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTKDGSVTSVQAIYVPADDLTDPAPATTFTHLDA
TTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTAQAVKEILQRYKDLQDIIAILGMDELSDEDKLVVSRARKIQ
RFLSQPFFVAEAFTGLSGKYVKLEDTIKGFKEIIAGRHDNLPENAFYLVGTIEEAIEKAKKL

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=465, Percent_Identity=71.8279569892473, Blast_Score=669, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=306, Percent_Identity=30.0653594771242, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI19913428, Length=419, Percent_Identity=25.0596658711217, Blast_Score=121, Evalue=1e-27,
Organism=Homo sapiens, GI19913426, Length=439, Percent_Identity=23.4624145785877, Blast_Score=112, Evalue=9e-25,
Organism=Homo sapiens, GI50345984, Length=299, Percent_Identity=27.0903010033445, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI4757810, Length=299, Percent_Identity=27.0903010033445, Blast_Score=100, Evalue=2e-21,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=69.4805194805195, Blast_Score=648, Evalue=0.0,
Organism=Escherichia coli, GI1788251, Length=411, Percent_Identity=28.2238442822384, Blast_Score=132, Evalue=4e-32,
Organism=Escherichia coli, GI1790172, Length=316, Percent_Identity=27.8481012658228, Blast_Score=118, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI25144756, Length=465, Percent_Identity=69.8924731182796, Blast_Score=652, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17570191, Length=430, Percent_Identity=25.1162790697674, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17565854, Length=317, Percent_Identity=29.3375394321767, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI17510931, Length=422, Percent_Identity=24.1706161137441, Blast_Score=116, Evalue=2e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=363, Percent_Identity=24.2424242424242, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988063, Length=363, Percent_Identity=24.2424242424242, Blast_Score=94, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71988074, Length=267, Percent_Identity=23.9700374531835, Blast_Score=75, Evalue=8e-14,
Organism=Saccharomyces cerevisiae, GI6322581, Length=458, Percent_Identity=70.3056768558952, Blast_Score=658, Evalue=0.0,
Organism=Saccharomyces cerevisiae, GI6319603, Length=423, Percent_Identity=25.7683215130024, Blast_Score=127, Evalue=3e-30,
Organism=Saccharomyces cerevisiae, GI6319370, Length=365, Percent_Identity=26.027397260274, Blast_Score=100, Evalue=4e-22,
Organism=Saccharomyces cerevisiae, GI6320016, Length=254, Percent_Identity=27.9527559055118, Blast_Score=87, Evalue=7e-18,
Organism=Drosophila melanogaster, GI24638766, Length=465, Percent_Identity=71.3978494623656, Blast_Score=664, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=467, Percent_Identity=67.4518201284797, Blast_Score=632, Evalue=0.0,
Organism=Drosophila melanogaster, GI20129479, Length=341, Percent_Identity=28.4457478005865, Blast_Score=125, Evalue=4e-29,
Organism=Drosophila melanogaster, GI24583992, Length=325, Percent_Identity=28.9230769230769, Blast_Score=123, Evalue=2e-28,
Organism=Drosophila melanogaster, GI24583988, Length=306, Percent_Identity=30.0653594771242, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24583986, Length=306, Percent_Identity=30.0653594771242, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI24583984, Length=306, Percent_Identity=30.0653594771242, Blast_Score=122, Evalue=4e-28,
Organism=Drosophila melanogaster, GI281361666, Length=432, Percent_Identity=25.2314814814815, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24646341, Length=432, Percent_Identity=25.2314814814815, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI17136796, Length=432, Percent_Identity=25.2314814814815, Blast_Score=116, Evalue=3e-26,
Organism=Drosophila melanogaster, GI24638768, Length=93, Percent_Identity=55.9139784946236, Blast_Score=95, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24658560, Length=299, Percent_Identity=26.4214046822742, Blast_Score=94, Evalue=2e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 50264; Mature: 50264

Theoretical pI: Translated: 4.53; Mature: 4.53

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEGKISQIIGPVVDVDFPEGQLPSILDALTVARPDGSKLVLETQQHLGDERVRAIAMEG
CCCCCHHHHHCCHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHEEEECC
TEGLVRGIPVINTGKPIQVPVGQNVLGRMLNVVGEPIDGMGDIDSDTTRSIHRSAPKFDE
CCHHHHCCCEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHH
LSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGYSVFAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
VGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDVEHRDV
CCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCEEEEEEHHHHHHHHHCCCCCEE
LLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTKDGSVTSVQAIY
EEHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
VPADDLTDPAPATTFTHLDATTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTA
ECCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCHH
QAVKEILQRYKDLQDIIAILGMDELSDEDKLVVSRARKIQRFLSQPFFVAEAFTGLSGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE
VKLEDTIKGFKEIIAGRHDNLPENAFYLVGTIEEAIEKAKKL
EEHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHCC
>Mature Secondary Structure
MQEGKISQIIGPVVDVDFPEGQLPSILDALTVARPDGSKLVLETQQHLGDERVRAIAMEG
CCCCCHHHHHCCHHCCCCCCCCCHHHHHHHHHCCCCCCEEEEEHHHHCCHHHHHEEEECC
TEGLVRGIPVINTGKPIQVPVGQNVLGRMLNVVGEPIDGMGDIDSDTTRSIHRSAPKFDE
CCHHHHCCCEECCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCHHH
LSTKSEMFETGIKVIDLLEPYSRGGKTGLFGGAGVGKTVLIMELINNIAKQQSGYSVFAG
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEC
VGERTREGNDLWEEMKESGVIDKTALVFGQMNEPPGARARVALTGLSIAEYFRDVEHRDV
CCCCCCCCHHHHHHHHHCCCCCHHHHHEECCCCCCCCCEEEEEEHHHHHHHHHCCCCCEE
LLFVDNIFRFTQAGSEVSALLGRMPSAVGYQPTLGTEMGELQDRIVSTKDGSVTSVQAIY
EEHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEEEE
VPADDLTDPAPATTFTHLDATTVLSRSIAELGIYPAVDPLDSTSRILDPNIVGDDHYDTA
ECCCCCCCCCCCCEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHCCCCCCCCCCCCHH
QAVKEILQRYKDLQDIIAILGMDELSDEDKLVVSRARKIQRFLSQPFFVAEAFTGLSGKY
HHHHHHHHHHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCCE
VKLEDTIKGFKEIIAGRHDNLPENAFYLVGTIEEAIEKAKKL
EEHHHHHHHHHHHHCCCCCCCCCCCEEEEECHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA