| Definition | Prosthecochloris aestuarii DSM 271 chromosome, complete genome. |
|---|---|
| Accession | NC_011059 |
| Length | 2,512,923 |
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The map label for this gene is pol [H]
Identifier: 194332859
GI number: 194332859
Start: 5789
End: 8191
Strand: Reverse
Name: pol [H]
Synonym: Paes_0006
Alternate gene names: 194332859
Gene position: 8191-5789 (Counterclockwise)
Preceding gene: 194332860
Following gene: 194332858
Centisome position: 0.33
GC content: 43.95
Gene sequence:
>2403_bases ATGACGTCAACCATCCTCGATACAATACAACATAACCCCCTGCTCTTCGGAAAAGACACGGAAGAATGCATTGTGGGAGC CCATCAGCAATCAGACAGCACCGTAAGAATCTACACAAGAAAGGGTTTATCGACAGAAAGCAGGGATGAAGCATTTTACC CATACTTCTTTCTCTCAGACGGTGCCCTGCTCAGCGAGTTCACACCGCCAGAGAATGAAAAGTTCTGGCTCATCAAACTT CAGGGCAGCAATTACTACCGATATCTTGCGATTTTCAGAAGTTGGAGCAACTACCGGGCAGCAGTTGAGCATATTCAATC GAAGAGTGCAAGAGCAAACGATACTGATGAAATCCCGGCACCATCCGTTGCTCAAAAAACACACTTACTGTATAACAAAG GGGATGCCGTTACCCAATTCCTTATGCAGACAGGCAAAACGATGTTCAAGGGAATGGTATTTGAAGATCTCTACCGGATG CAGCTTGATATTGAAACCTATTTCAAACCGGAATCAGGAAAGAGCTCAAAAGTGGAGATCGGTAAAGATCAGGTCATTAT TGTCTCTCTCAGCGACAACCGCGGATGGGAAAAAGTCATCCATGCGCACGGCAGGACAGAAAAAGAACTGCTCATAGAGC TCATTGCAATCATCCGTGAGAAGGATCCTGATGTGATTGAAGGGCACAATATTTTCCGTTTTGATCTGCCATACCTGCAT CGCAGATGTGAAATCAATGGAATTGAGTTCAGGATAGGACGTGATCAATCAATTCCAAGAAACTATCCGGCAAGCATACG ATTCGCAGAACGATCAATCGATTACACATTCTACGATATTGCCGGGCGTCATGTCATCGACACATGGTTTCTCGTACAGA GCTTTGATGTATCGAAACGGGCTATGCCGGGATATGGTTTAAAAGCTGCAGCAAAATTCTTTGGGGTTGCACGTGAAAAC AGGGTCTATGTCGATTACGCGGATATGGCTGATCTCTGGGAGAACAACCCTGAAAAGCTTCTGGAATATGCACTGGACGA TGTCAGGGAAACACGAGAGATCGCATCGATGCTTTCAGGCAGCAACTACTACATGACAAAGATGATGCCTTATGGCTATG CACAATGTTCCCGATTGGGACCTGCTGCCAAAATTGAAGCGTTACTTGTAAGAGAGTACCTGAAAGAAAAACACTCGCTT CCACGACCGGAAAACGGTCAACAGCATTCAGGAGGATATACTGAGGTCTTTCTTCAAGGCATTCTCGGACCCATCGTCTA TGCCGATGTTGAATCGCTCTATCCGTCCATCATGCTTTCGTACAAAATCTGCCCAAAAAGTGATGAACGCAAAATATTCC CCCAGATCCTTACGAATCTCAAAGATCTGCGATTTGCAGCTAAAAAGAAGGCGAAAGAAGAAAGAAAACAGGACAACATC CAGGTTGCTGACAACTTCGAGGCGATGCAAGCATCCTTTAAAATCGTGATCAATGCGATGTATGGCTATCTGGGATTCAG CGCGGGAATTTTCAATGACTACGAAGAAGCTGACAGAGTCACCACAACAGGCCAGGATATAGCAAGGCAGATGATACGTG AGTTTGAATCAAGAGGATCAAGAGTTATTGAAGTCGATACCGATGGTATTCTCTTTATGCCACCGTCGCATATTCAATCT TCTGAAGAGGAAATAAGCCTGGTCAATGAAGTCTCTTCGGTCATGCCGGAAGGCATCAATATTGGATATGATGGAAGGTA CAGGAAAATGATATCGTACCTGAAAAAAAACTACGCACTCCTGCACTATGATGGAACCATGCAACTGAAAGGATCATCGC TTGTCAGCAGGAGTGGAGAAAAATTCGGACGTGAATTTATCAGAGATGGATTCCGCCAGTTGCTTGAGGAAGATATTCAG GGGCTTCATGATCTCTATGTGACATGGAAAGAGAGAATTATTCATCACGACTGGAATGTTCTGGATTTTGCGAAAACAGA ATCCATGAAAAGTTCAATAGATCAATACCGTGCTGATGTTGAATCGGGAAAACGCTCCAGAACAATAACCTATGAACTTG CCATCAGAAAAGGTATCGACGTCAATAAAGGAGACCGCATCACCTACTATGTCTCCGGAAGCGGCATGCAGAGCAATCAT TATGAGAAAGGAAAAATAGCGGAGGAATGGGATAAGAACACCCCTGACGAAAACACGCAGTTTTATCTGAAAAGGCTTGA TGAATTTGCACAGAAATTTATCCCGTTTTTCAAACCACAGGATTTCAGTGCAATTTTTTCATCGGATACCCTTTTTTCGT TTTCACCAGAGGGAATAGAAATTATCCGCGAAATTCGTAACAAAGAGGCAAATTCACAGCATGAAGAAGAGATTTCCTTC TAA
Upstream 100 bases:
>100_bases TTCAGTTCTTATGGTCAAGATAGGGCGGTAGGCATCTCAAATGTTTCACGTGAAACATTCAATAAAACCCCGGCACACAA CAGCAGATCAAGCCACAAAC
Downstream 100 bases:
>100_bases CTAAAAATTAAATATTTTCGTAAAAACAAATATTTACATAAAAAAATAAACCTTAACACAATATAAACCTAACAAAAAGC AAACAAAATTCCAGACATCT
Product: DNA polymerase B region
Products: NA
Alternate protein names: Pfu polymerase [H]
Number of amino acids: Translated: 800; Mature: 799
Protein sequence:
>800_residues MTSTILDTIQHNPLLFGKDTEECIVGAHQQSDSTVRIYTRKGLSTESRDEAFYPYFFLSDGALLSEFTPPENEKFWLIKL QGSNYYRYLAIFRSWSNYRAAVEHIQSKSARANDTDEIPAPSVAQKTHLLYNKGDAVTQFLMQTGKTMFKGMVFEDLYRM QLDIETYFKPESGKSSKVEIGKDQVIIVSLSDNRGWEKVIHAHGRTEKELLIELIAIIREKDPDVIEGHNIFRFDLPYLH RRCEINGIEFRIGRDQSIPRNYPASIRFAERSIDYTFYDIAGRHVIDTWFLVQSFDVSKRAMPGYGLKAAAKFFGVAREN RVYVDYADMADLWENNPEKLLEYALDDVRETREIASMLSGSNYYMTKMMPYGYAQCSRLGPAAKIEALLVREYLKEKHSL PRPENGQQHSGGYTEVFLQGILGPIVYADVESLYPSIMLSYKICPKSDERKIFPQILTNLKDLRFAAKKKAKEERKQDNI QVADNFEAMQASFKIVINAMYGYLGFSAGIFNDYEEADRVTTTGQDIARQMIREFESRGSRVIEVDTDGILFMPPSHIQS SEEEISLVNEVSSVMPEGINIGYDGRYRKMISYLKKNYALLHYDGTMQLKGSSLVSRSGEKFGREFIRDGFRQLLEEDIQ GLHDLYVTWKERIIHHDWNVLDFAKTESMKSSIDQYRADVESGKRSRTITYELAIRKGIDVNKGDRITYYVSGSGMQSNH YEKGKIAEEWDKNTPDENTQFYLKRLDEFAQKFIPFFKPQDFSAIFSSDTLFSFSPEGIEIIREIRNKEANSQHEEEISF
Sequences:
>Translated_800_residues MTSTILDTIQHNPLLFGKDTEECIVGAHQQSDSTVRIYTRKGLSTESRDEAFYPYFFLSDGALLSEFTPPENEKFWLIKL QGSNYYRYLAIFRSWSNYRAAVEHIQSKSARANDTDEIPAPSVAQKTHLLYNKGDAVTQFLMQTGKTMFKGMVFEDLYRM QLDIETYFKPESGKSSKVEIGKDQVIIVSLSDNRGWEKVIHAHGRTEKELLIELIAIIREKDPDVIEGHNIFRFDLPYLH RRCEINGIEFRIGRDQSIPRNYPASIRFAERSIDYTFYDIAGRHVIDTWFLVQSFDVSKRAMPGYGLKAAAKFFGVAREN RVYVDYADMADLWENNPEKLLEYALDDVRETREIASMLSGSNYYMTKMMPYGYAQCSRLGPAAKIEALLVREYLKEKHSL PRPENGQQHSGGYTEVFLQGILGPIVYADVESLYPSIMLSYKICPKSDERKIFPQILTNLKDLRFAAKKKAKEERKQDNI QVADNFEAMQASFKIVINAMYGYLGFSAGIFNDYEEADRVTTTGQDIARQMIREFESRGSRVIEVDTDGILFMPPSHIQS SEEEISLVNEVSSVMPEGINIGYDGRYRKMISYLKKNYALLHYDGTMQLKGSSLVSRSGEKFGREFIRDGFRQLLEEDIQ GLHDLYVTWKERIIHHDWNVLDFAKTESMKSSIDQYRADVESGKRSRTITYELAIRKGIDVNKGDRITYYVSGSGMQSNH YEKGKIAEEWDKNTPDENTQFYLKRLDEFAQKFIPFFKPQDFSAIFSSDTLFSFSPEGIEIIREIRNKEANSQHEEEISF >Mature_799_residues TSTILDTIQHNPLLFGKDTEECIVGAHQQSDSTVRIYTRKGLSTESRDEAFYPYFFLSDGALLSEFTPPENEKFWLIKLQ GSNYYRYLAIFRSWSNYRAAVEHIQSKSARANDTDEIPAPSVAQKTHLLYNKGDAVTQFLMQTGKTMFKGMVFEDLYRMQ LDIETYFKPESGKSSKVEIGKDQVIIVSLSDNRGWEKVIHAHGRTEKELLIELIAIIREKDPDVIEGHNIFRFDLPYLHR RCEINGIEFRIGRDQSIPRNYPASIRFAERSIDYTFYDIAGRHVIDTWFLVQSFDVSKRAMPGYGLKAAAKFFGVARENR VYVDYADMADLWENNPEKLLEYALDDVRETREIASMLSGSNYYMTKMMPYGYAQCSRLGPAAKIEALLVREYLKEKHSLP RPENGQQHSGGYTEVFLQGILGPIVYADVESLYPSIMLSYKICPKSDERKIFPQILTNLKDLRFAAKKKAKEERKQDNIQ VADNFEAMQASFKIVINAMYGYLGFSAGIFNDYEEADRVTTTGQDIARQMIREFESRGSRVIEVDTDGILFMPPSHIQSS EEEISLVNEVSSVMPEGINIGYDGRYRKMISYLKKNYALLHYDGTMQLKGSSLVSRSGEKFGREFIRDGFRQLLEEDIQG LHDLYVTWKERIIHHDWNVLDFAKTESMKSSIDQYRADVESGKRSRTITYELAIRKGIDVNKGDRITYYVSGSGMQSNHY EKGKIAEEWDKNTPDENTQFYLKRLDEFAQKFIPFFKPQDFSAIFSSDTLFSFSPEGIEIIREIRNKEANSQHEEEISF
Specific function: In addition to polymerase activity, this DNA polymerase exhibits 3' to 5' exonuclease activity [H]
COG id: COG0417
COG function: function code L; DNA polymerase elongation subunit (family B)
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the DNA polymerase type-B family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6320101, Length=583, Percent_Identity=23.156089193825, Blast_Score=87, Evalue=1e-17,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006172 - InterPro: IPR017964 - InterPro: IPR006133 - InterPro: IPR006134 - InterPro: IPR004578 - InterPro: IPR023211 - InterPro: IPR012337 [H]
Pfam domain/function: PF00136 DNA_pol_B; PF03104 DNA_pol_B_exo [H]
EC number: =2.7.7.7 [H]
Molecular weight: Translated: 92354; Mature: 92223
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSTILDTIQHNPLLFGKDTEECIVGAHQQSDSTVRIYTRKGLSTESRDEAFYPYFFLSD CCCHHHHHHCCCCEEECCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECC GALLSEFTPPENEKFWLIKLQGSNYYRYLAIFRSWSNYRAAVEHIQSKSARANDTDEIPA CCHHHCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PSVAQKTHLLYNKGDAVTQFLMQTGKTMFKGMVFEDLYRMQLDIETYFKPESGKSSKVEI CCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEE GKDQVIIVSLSDNRGWEKVIHAHGRTEKELLIELIAIIREKDPDVIEGHNIFRFDLPYLH CCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEECCHHHH RRCEINGIEFRIGRDQSIPRNYPASIRFAERSIDYTFYDIAGRHVIDTWFLVQSFDVSKR HHCCCCCEEEEECCCCCCCCCCCCCEEEEHHCCCEEEEECCCCHHHHHHHHHHHCCCHHH AMPGYGLKAAAKFFGVARENRVYVDYADMADLWENNPEKLLEYALDDVRETREIASMLSG CCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC SNYYMTKMMPYGYAQCSRLGPAAKIEALLVREYLKEKHSLPRPENGQQHSGGYTEVFLQG CCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ILGPIVYADVESLYPSIMLSYKICPKSDERKIFPQILTNLKDLRFAAKKKAKEERKQDNI HHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QVADNFEAMQASFKIVINAMYGYLGFSAGIFNDYEEADRVTTTGQDIARQMIREFESRGS EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC RVIEVDTDGILFMPPSHIQSSEEEISLVNEVSSVMPEGINIGYDGRYRKMISYLKKNYAL EEEEECCCCEEEECCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEE LHYDGTMQLKGSSLVSRSGEKFGREFIRDGFRQLLEEDIQGLHDLYVTWKERIIHHDWNV EEECCEEEECCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LDFAKTESMKSSIDQYRADVESGKRSRTITYELAIRKGIDVNKGDRITYYVSGSGMQSNH EHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCC YEKGKIAEEWDKNTPDENTQFYLKRLDEFAQKFIPFFKPQDFSAIFSSDTLFSFSPEGIE CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEECCHHHH IIREIRNKEANSQHEEEISF HHHHHHCCCCCCCCHHHCCC >Mature Secondary Structure TSTILDTIQHNPLLFGKDTEECIVGAHQQSDSTVRIYTRKGLSTESRDEAFYPYFFLSD CCHHHHHHCCCCEEECCCHHHHHCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEEECC GALLSEFTPPENEKFWLIKLQGSNYYRYLAIFRSWSNYRAAVEHIQSKSARANDTDEIPA CCHHHCCCCCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC PSVAQKTHLLYNKGDAVTQFLMQTGKTMFKGMVFEDLYRMQLDIETYFKPESGKSSKVEI CCHHHHHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCEEE GKDQVIIVSLSDNRGWEKVIHAHGRTEKELLIELIAIIREKDPDVIEGHNIFRFDLPYLH CCCEEEEEEECCCCCHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEECCCCEEEECCHHHH RRCEINGIEFRIGRDQSIPRNYPASIRFAERSIDYTFYDIAGRHVIDTWFLVQSFDVSKR HHCCCCCEEEEECCCCCCCCCCCCCEEEEHHCCCEEEEECCCCHHHHHHHHHHHCCCHHH AMPGYGLKAAAKFFGVARENRVYVDYADMADLWENNPEKLLEYALDDVRETREIASMLSG CCCCCCHHHHHHHHHHHCCCEEEEEEHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCC SNYYMTKMMPYGYAQCSRLGPAAKIEALLVREYLKEKHSLPRPENGQQHSGGYTEVFLQG CCEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHH ILGPIVYADVESLYPSIMLSYKICPKSDERKIFPQILTNLKDLRFAAKKKAKEERKQDNI HHHHHHHHHHHHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC QVADNFEAMQASFKIVINAMYGYLGFSAGIFNDYEEADRVTTTGQDIARQMIREFESRGS EEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHHCCC RVIEVDTDGILFMPPSHIQSSEEEISLVNEVSSVMPEGINIGYDGRYRKMISYLKKNYAL EEEEECCCCEEEECCHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCEE LHYDGTMQLKGSSLVSRSGEKFGREFIRDGFRQLLEEDIQGLHDLYVTWKERIIHHDWNV EEECCEEEECCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCE LDFAKTESMKSSIDQYRADVESGKRSRTITYELAIRKGIDVNKGDRITYYVSGSGMQSNH EHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCCCCCCEEEEEEECCCCCCCC YEKGKIAEEWDKNTPDENTQFYLKRLDEFAQKFIPFFKPQDFSAIFSSDTLFSFSPEGIE CCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEECCHHHH IIREIRNKEANSQHEEEISF HHHHHHCCCCCCCCHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8441634; 1762925; 1579479 [H]