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The map label for this gene is 193213615

Identifier: 193213615

GI number: 193213615

Start: 2181948

End: 2182637

Strand: Direct

Name: 193213615

Synonym: Cpar_1979

Alternate gene names: NA

Gene position: 2181948-2182637 (Clockwise)

Preceding gene: 193213614

Following gene: 193213616

Centisome position: 95.31

GC content: 56.38

Gene sequence:

>690_bases
ATGAAACAGATCACAAGAATGGCAACGCTTGGTGTGTTGCTGCTTGCTGGCGCCAGCGGGACCGCTTTCGCCAACGGCAC
CAGTGCTCCCGAACCTGCACCGATCCGCTACACGCCACCTCCGCCGCCGCCACCGGCTCCGGCTCCTGCGCCAGTGGTAG
ACACCTGTGAACCTGGCCCGTACATCAGCATCTCCGCTGGCATTGGCATTCCTGAAGATATTAAGGCTCCGGTGATTAGC
CAGCCAACGAATGGCTACCCCACAGACGGCAAAATCGATATGGAGAACGGCCTTGCCCTGAATGGCGCGATCGGTTACGA
TTTCGGTGATGCCAGGCTTGAAGCGGCCGTCGGATACCAGAGCCACGATATTGCCGATAGCGAAGATGATATCGATATCT
CCCTGCTGACCGTGATGGCTAATGCCTACTACGATATCAACACCGGTTCGGACGTCTCGCCATACATCATGGCTGGTGCC
GGTTGGGCACATGTTGGCATGCCAAGCGATGAGAGTGATGACGTCTTCGCGTGGCAGGTCGGCGCAGGACTTGGCGTCAA
AGTCTCCGAATGCACGACGCTCGATCTGGGATACCGCTACCTGAAGCCGAATAAATTCGGTCCTGATGGTAACGATGTTT
ACAAGTGGGCGGTTCACAACGTCATGCTTGGCCTCAGATTTAACTTCTGA

Upstream 100 bases:

>100_bases
CTTTTTTTTGATAAGTTTCGATAAAATAAAAGAGTGTTCTTTTTGAAAGCAGATTTTCAGTGCTTCCCGTACCATCAATC
ACAACCAAATGGAAACAACA

Downstream 100 bases:

>100_bases
GCTGGAAAACCCAACATGAAAAGCAAAAGCCGGGAGCATTACGCTTCCGGCTTTTTTATGCACATCCCGATCATCCCCCT
CTCAAATCACCGGCCAGCAC

Product: porin opacity type

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 229; Mature: 229

Protein sequence:

>229_residues
MKQITRMATLGVLLLAGASGTAFANGTSAPEPAPIRYTPPPPPPPAPAPAPVVDTCEPGPYISISAGIGIPEDIKAPVIS
QPTNGYPTDGKIDMENGLALNGAIGYDFGDARLEAAVGYQSHDIADSEDDIDISLLTVMANAYYDINTGSDVSPYIMAGA
GWAHVGMPSDESDDVFAWQVGAGLGVKVSECTTLDLGYRYLKPNKFGPDGNDVYKWAVHNVMLGLRFNF

Sequences:

>Translated_229_residues
MKQITRMATLGVLLLAGASGTAFANGTSAPEPAPIRYTPPPPPPPAPAPAPVVDTCEPGPYISISAGIGIPEDIKAPVIS
QPTNGYPTDGKIDMENGLALNGAIGYDFGDARLEAAVGYQSHDIADSEDDIDISLLTVMANAYYDINTGSDVSPYIMAGA
GWAHVGMPSDESDDVFAWQVGAGLGVKVSECTTLDLGYRYLKPNKFGPDGNDVYKWAVHNVMLGLRFNF
>Mature_229_residues
MKQITRMATLGVLLLAGASGTAFANGTSAPEPAPIRYTPPPPPPPAPAPAPVVDTCEPGPYISISAGIGIPEDIKAPVIS
QPTNGYPTDGKIDMENGLALNGAIGYDFGDARLEAAVGYQSHDIADSEDDIDISLLTVMANAYYDINTGSDVSPYIMAGA
GWAHVGMPSDESDDVFAWQVGAGLGVKVSECTTLDLGYRYLKPNKFGPDGNDVYKWAVHNVMLGLRFNF

Specific function: Unknown

COG id: COG3637

COG function: function code M; Opacity protein and related surface antigens

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the opacity porin family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011250
- InterPro:   IPR003394 [H]

Pfam domain/function: PF02462 Opacity [H]

EC number: NA

Molecular weight: Translated: 24077; Mature: 24077

Theoretical pI: Translated: 4.07; Mature: 4.07

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKQITRMATLGVLLLAGASGTAFANGTSAPEPAPIRYTPPPPPPPAPAPAPVVDTCEPGP
CCHHHHHHHHEEEEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
YISISAGIGIPEDIKAPVISQPTNGYPTDGKIDMENGLALNGAIGYDFGDARLEAAVGYQ
EEEEECCCCCCHHCCCCEECCCCCCCCCCCEEECCCCEEEECEECCCCCCCEEEEECCCC
SHDIADSEDDIDISLLTVMANAYYDINTGSDVSPYIMAGAGWAHVGMPSDESDDVFAWQV
CCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCEEEECCCEEECCCCCCCCCCEEEEEE
GAGLGVKVSECTTLDLGYRYLKPNKFGPDGNDVYKWAVHNVMLGLRFNF
CCCCCEEECCEEEEECCEEEECCCCCCCCCCHHHHEEEHEEEEEEEECC
>Mature Secondary Structure
MKQITRMATLGVLLLAGASGTAFANGTSAPEPAPIRYTPPPPPPPAPAPAPVVDTCEPGP
CCHHHHHHHHEEEEEECCCCCEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCC
YISISAGIGIPEDIKAPVISQPTNGYPTDGKIDMENGLALNGAIGYDFGDARLEAAVGYQ
EEEEECCCCCCHHCCCCEECCCCCCCCCCCEEECCCCEEEECEECCCCCCCEEEEECCCC
SHDIADSEDDIDISLLTVMANAYYDINTGSDVSPYIMAGAGWAHVGMPSDESDDVFAWQV
CCCCCCCCCCCCEEEEEEEECCEEEECCCCCCCCEEEECCCEEECCCCCCCCCCEEEEEE
GAGLGVKVSECTTLDLGYRYLKPNKFGPDGNDVYKWAVHNVMLGLRFNF
CCCCCEEECCEEEEECCEEEECCCCCCCCCCHHHHEEEHEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12704232 [H]