| Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
|---|---|
| Accession | NC_011027 |
| Length | 2,289,249 |
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The map label for this gene is 193213597
Identifier: 193213597
GI number: 193213597
Start: 2156996
End: 2158702
Strand: Direct
Name: 193213597
Synonym: Cpar_1958
Alternate gene names: NA
Gene position: 2156996-2158702 (Clockwise)
Preceding gene: 193213596
Following gene: 193213602
Centisome position: 94.22
GC content: 56.82
Gene sequence:
>1707_bases ATGACAGCCCGCTCCTCCTTTTCGCGTCCTTTGCTGACGGGCATTCTGCTTGCCTTCATCCTTCTCACTCTGTTCTCGGA GAGTGCACGGGCTGACTTCCGGCCCTCCATGCTGCAGGTGAAGAAGCCCTCTCAGGTGCAAAAAACATCACCACGCCCCA TGCTGATGCGGAAATCCACAACAACAGTTCGCCTGTGGGATGGCCTGGGAGAACTCGGCAAGGAGCATTTCCAGTGCCTC AATAATGTGGTTACGTCAGTGCCTTCGGTCGAGAAGATGAAGCAGTGGTGGGTGCAGTGGTCAACCAATGATGCCGGATT TTCGAAGGCGGTCTATCAGGTTTCGCTCTTCCCCTTCCCCGAATCGGTTGAGAACTGGAAGACCCCTCCTGGTCTGCTCA AGACGGGAACCATTCAGAAAATCAGCGGAGCCGGGAACCAGCCGTTGTTCTCGATAGATCTTGCGGCGCTTATGCCTGGT AAAATGGGCTCTGCCTCGATCAAAAAGATCGCTCCGCAAAAGATGCTGCAACCCCGATTTTCGTCATCACCAGCCTCCCC GTCGATTGCGGCCAAGCCGCTGAGTCCGGCTGCCGCCCGAGTCGTTCAGCTCAAAAGGCCGGAGCTGAAGCAGGCGCCGA CAAAGCCTGTCCTGCACAATCTTGCCCGGAAAGAGCCTTTCGCTGTCACCTTTTATGTGCGCATCATCACCCTCAACGCT GCGGGCAAGCCAGTCGCCACGCCATCGAAAGCCGCGACGCTGCACCTGAGCACTCCGGGAGAATCGAACTTCGTCTGGTA CGGCGACCCCAATCCCAATGTGGCTACGCCTGAAATCCATGCGCCGGCAATAAAAATCGCCAGCTACGAGCCGTTCCAGC CCGCGATGAGCGACTGGGACCGCAACTACATCGTCACCAAAGATATGCCGATGTTCGGCTACACAAAGGGGCAGGAGCTC TTCTTCCCGCGTGACGACGGCTCGAAAGGTGGCTGGGAAGCGGTCAAGGATGCCGTCGGCAGCGTGGTTGGATTCGTCAC TGAGAGCATCAACAGGGTGGCCAACGCCTACAACAGCCTGAAGCAAAAGGCTCTCAATCTCGCCATCTCCCTGGCGAAAA ACACCGTCGGGTGCGGGAAGACATGCCAGCAGGCCTTCACCTTCGGACTGGATTACGGCCTGGCCGCCATGGGTATGCCG CCGTCACTGCCGGATTTCGATGCGATGATGAGCATGGGCAAGGATTACCTTATCGCCGAGATCGCTTCGGAAGCCTCGCC TTACCTGTCGGAAAACGATGTCCGCAAGGCGGTCAACTACCTCGAATCCGAGGTGCGCAAAACCGCCGATAACGGTGCGG ATGGCAGCAAGTGGCTGAAGCTGAACCCGAGGTTCCAGTACCACGATGCCGTGCTGATGCTCGAGGTCTCCAACCCCACG GGTAAGGTCACCGACAAGATCAGTTGCTGTATCCGCCAGAGCAAAGAGGTCTTCTATTTCCCGTTCGACAAGAAGAACTA TTTCATCTCCATTCCCCCGATCAAACCGGGCCAGACGCTCCGCATTCCCGTCCTGCTCAGACCGAACAATGTTCAGTGCA ATAACGGCAAGGGCATGCTGATGAGCGACTGGAACAAGATGATGGAAAAACCCGCGCTGCTCCAGATCTTTCCGGGCAAC AACGAACAGGTGTTAATCAAGCGGTAA
Upstream 100 bases:
>100_bases TTTATAGCCTGCATCAGCTTCCCGCAGGATATGTCACCGAGCCATCTTGCATTCGCTCACCAAAACCAACACGGCCATGG TACAATGCTTTCGTTCATCC
Downstream 100 bases:
>100_bases ACAGGGGAAAAGAGGCCGGACGGGCTCTGAAACGAAGAAAAAAGCTGAACCAATCCACATTCCGCCATCTGTAAAATTAT CCCTGCAAATCTGGAGTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 568; Mature: 567
Protein sequence:
>568_residues MTARSSFSRPLLTGILLAFILLTLFSESARADFRPSMLQVKKPSQVQKTSPRPMLMRKSTTTVRLWDGLGELGKEHFQCL NNVVTSVPSVEKMKQWWVQWSTNDAGFSKAVYQVSLFPFPESVENWKTPPGLLKTGTIQKISGAGNQPLFSIDLAALMPG KMGSASIKKIAPQKMLQPRFSSSPASPSIAAKPLSPAAARVVQLKRPELKQAPTKPVLHNLARKEPFAVTFYVRIITLNA AGKPVATPSKAATLHLSTPGESNFVWYGDPNPNVATPEIHAPAIKIASYEPFQPAMSDWDRNYIVTKDMPMFGYTKGQEL FFPRDDGSKGGWEAVKDAVGSVVGFVTESINRVANAYNSLKQKALNLAISLAKNTVGCGKTCQQAFTFGLDYGLAAMGMP PSLPDFDAMMSMGKDYLIAEIASEASPYLSENDVRKAVNYLESEVRKTADNGADGSKWLKLNPRFQYHDAVLMLEVSNPT GKVTDKISCCIRQSKEVFYFPFDKKNYFISIPPIKPGQTLRIPVLLRPNNVQCNNGKGMLMSDWNKMMEKPALLQIFPGN NEQVLIKR
Sequences:
>Translated_568_residues MTARSSFSRPLLTGILLAFILLTLFSESARADFRPSMLQVKKPSQVQKTSPRPMLMRKSTTTVRLWDGLGELGKEHFQCL NNVVTSVPSVEKMKQWWVQWSTNDAGFSKAVYQVSLFPFPESVENWKTPPGLLKTGTIQKISGAGNQPLFSIDLAALMPG KMGSASIKKIAPQKMLQPRFSSSPASPSIAAKPLSPAAARVVQLKRPELKQAPTKPVLHNLARKEPFAVTFYVRIITLNA AGKPVATPSKAATLHLSTPGESNFVWYGDPNPNVATPEIHAPAIKIASYEPFQPAMSDWDRNYIVTKDMPMFGYTKGQEL FFPRDDGSKGGWEAVKDAVGSVVGFVTESINRVANAYNSLKQKALNLAISLAKNTVGCGKTCQQAFTFGLDYGLAAMGMP PSLPDFDAMMSMGKDYLIAEIASEASPYLSENDVRKAVNYLESEVRKTADNGADGSKWLKLNPRFQYHDAVLMLEVSNPT GKVTDKISCCIRQSKEVFYFPFDKKNYFISIPPIKPGQTLRIPVLLRPNNVQCNNGKGMLMSDWNKMMEKPALLQIFPGN NEQVLIKR >Mature_567_residues TARSSFSRPLLTGILLAFILLTLFSESARADFRPSMLQVKKPSQVQKTSPRPMLMRKSTTTVRLWDGLGELGKEHFQCLN NVVTSVPSVEKMKQWWVQWSTNDAGFSKAVYQVSLFPFPESVENWKTPPGLLKTGTIQKISGAGNQPLFSIDLAALMPGK MGSASIKKIAPQKMLQPRFSSSPASPSIAAKPLSPAAARVVQLKRPELKQAPTKPVLHNLARKEPFAVTFYVRIITLNAA GKPVATPSKAATLHLSTPGESNFVWYGDPNPNVATPEIHAPAIKIASYEPFQPAMSDWDRNYIVTKDMPMFGYTKGQELF FPRDDGSKGGWEAVKDAVGSVVGFVTESINRVANAYNSLKQKALNLAISLAKNTVGCGKTCQQAFTFGLDYGLAAMGMPP SLPDFDAMMSMGKDYLIAEIASEASPYLSENDVRKAVNYLESEVRKTADNGADGSKWLKLNPRFQYHDAVLMLEVSNPTG KVTDKISCCIRQSKEVFYFPFDKKNYFISIPPIKPGQTLRIPVLLRPNNVQCNNGKGMLMSDWNKMMEKPALLQIFPGNN EQVLIKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62696; Mature: 62565
Theoretical pI: Translated: 10.16; Mature: 10.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 3.7 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 3.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTARSSFSRPLLTGILLAFILLTLFSESARADFRPSMLQVKKPSQVQKTSPRPMLMRKST CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCCCCCEEEECCC TTVRLWDGLGELGKEHFQCLNNVVTSVPSVEKMKQWWVQWSTNDAGFSKAVYQVSLFPFP CEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCCCEEEEEEEECCCC ESVENWKTPPGLLKTGTIQKISGAGNQPLFSIDLAALMPGKMGSASIKKIAPQKMLQPRF HHHHHCCCCCCCEECCCEEEECCCCCCCEEEEEHHHHCCCCCCCHHHHHHCHHHHHCCCC SSSPASPSIAAKPLSPAAARVVQLKRPELKQAPTKPVLHNLARKEPFAVTFYVRIITLNA CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEEEEEEEEEEEC AGKPVATPSKAATLHLSTPGESNFVWYGDPNPNVATPEIHAPAIKIASYEPFQPAMSDWD CCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCC RNYIVTKDMPMFGYTKGQELFFPRDDGSKGGWEAVKDAVGSVVGFVTESINRVANAYNSL CCEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQKALNLAISLAKNTVGCGKTCQQAFTFGLDYGLAAMGMPPSLPDFDAMMSMGKDYLIAE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHCCCCHHHHH IASEASPYLSENDVRKAVNYLESEVRKTADNGADGSKWLKLNPRFQYHDAVLMLEVSNPT HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCEEEEEEECCCC GKVTDKISCCIRQSKEVFYFPFDKKNYFISIPPIKPGQTLRIPVLLRPNNVQCNNGKGML CCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCEEEEEEEECCCCEEECCCCCCC MSDWNKMMEKPALLQIFPGNNEQVLIKR HHHHHHHHCCCCEEEEECCCCCEEEEEC >Mature Secondary Structure TARSSFSRPLLTGILLAFILLTLFSESARADFRPSMLQVKKPSQVQKTSPRPMLMRKST CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCHHHCCCCCCEEEECCC TTVRLWDGLGELGKEHFQCLNNVVTSVPSVEKMKQWWVQWSTNDAGFSKAVYQVSLFPFP CEEEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHEEECCCCCCCCEEEEEEEECCCC ESVENWKTPPGLLKTGTIQKISGAGNQPLFSIDLAALMPGKMGSASIKKIAPQKMLQPRF HHHHHCCCCCCCEECCCEEEECCCCCCCEEEEEHHHHCCCCCCCHHHHHHCHHHHHCCCC SSSPASPSIAAKPLSPAAARVVQLKRPELKQAPTKPVLHNLARKEPFAVTFYVRIITLNA CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHCCCCHHHHHHHHCCCCCEEEEEEEEEEEEC AGKPVATPSKAATLHLSTPGESNFVWYGDPNPNVATPEIHAPAIKIASYEPFQPAMSDWD CCCCCCCCCCCEEEEEECCCCCCEEEECCCCCCCCCCCCCCCEEEECCCCCCCHHHHHCC RNYIVTKDMPMFGYTKGQELFFPRDDGSKGGWEAVKDAVGSVVGFVTESINRVANAYNSL CCEEEECCCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KQKALNLAISLAKNTVGCGKTCQQAFTFGLDYGLAAMGMPPSLPDFDAMMSMGKDYLIAE HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHCCCCCCCCCHHHHHHCCCCHHHHH IASEASPYLSENDVRKAVNYLESEVRKTADNGADGSKWLKLNPRFQYHDAVLMLEVSNPT HHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCEEECCEEEEEEECCCC GKVTDKISCCIRQSKEVFYFPFDKKNYFISIPPIKPGQTLRIPVLLRPNNVQCNNGKGML CCHHHHHHHHHHCCCCEEEEEECCCCEEEECCCCCCCCEEEEEEEECCCCEEECCCCCCC MSDWNKMMEKPALLQIFPGNNEQVLIKR HHHHHHHHCCCCEEEEECCCCCEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA