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The map label for this gene is dapF [H]

Identifier: 193213537

GI number: 193213537

Start: 2095181

End: 2095975

Strand: Direct

Name: dapF [H]

Synonym: Cpar_1898

Alternate gene names: 193213537

Gene position: 2095181-2095975 (Clockwise)

Preceding gene: 193213533

Following gene: 193213538

Centisome position: 91.52

GC content: 58.24

Gene sequence:

>795_bases
ATGCAGATCGAATTCACCAAAATGTCGGGAGCCGGCAACGACTTCATCGTCATCGACAACAGGCAGAGTCAGTTCAACCT
CGAACCGGAACAGGTGCATGCGATGTGTACCCGGCGAACCGGCATCGGTGCTGACGGCCTGATTCTTATCGAGGCATCCG
AAACTGCCGATTTCAGAATGAATTACCACAACGCCGACGGGTATCCCGGTTCGATGTGCGGAAACGGCGGCCGGTGCGCG
GTCTACTTCTCCTACCTCATCGGTATCCGCCCGGCAGGAAATCGCTACCGCTTTGAAGCCGGCCCCGGAACGTATGAGGC
AGAGATCACTGGCAAGGAGTCGGTCAGGCTACATATGCTTCCGCCAAAAAACTTCAGAGACGATCTGCATGCGGGCGCAT
GGAGCTGCCATTTCGTCGATACCGGTTCCCCGCACGCCATCGCCTATGTCGATAACCTCGACCAGATGGACGTCTTCACC
GAAGGCCGCACCATCCGGAATAACAAGGAGGTCTTCCCGGAAGGCACCAATGTCAACTTTCTGGAAGTCACCGCACCCGA
TGCACTCAGCATCAGGACATTCGAGCGGGGCGTCGAGGATGAAACCCTCGCCTGCGGCACCGGCACGGTAGCGGCCGCTC
TGATGAGCTACCGGCTCGGCAAGGTTGCGTCATCGCCAGTCAGGGTGACGGTAAGAAGCGGCGAAACACTGATGGTCGGC
TTCAATGACGCGATGGACGAGATTTACCTCGAAGGGCCGGCCCGCCCGGTCTATCAGGGAACTATCGCCCTGTAA

Upstream 100 bases:

>100_bases
CAGAGGGCTTTGGCGCGATTTGTCTGCGCTCGGGCGAGCTGCCGGGAAAACGGGTACCGCAATCAGCATCTCAGCAAAAC
AAAGCATCCGGATCAACATC

Downstream 100 bases:

>100_bases
GTCCGCCTTATAATTAGTTTGTCGTGGCAGGGTCAACAGCCCTGATCCGAAAGCCTGAAGTCGATGAGCCATGCATACGA
CAAGCTTCTATCATACAGCT

Product: diaminopimelate epimerase

Products: NA

Alternate protein names: DAP epimerase [H]

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETADFRMNYHNADGYPGSMCGNGGRCA
VYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHMLPPKNFRDDLHAGAWSCHFVDTGSPHAIAYVDNLDQMDVFT
EGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLGKVASSPVRVTVRSGETLMVG
FNDAMDEIYLEGPARPVYQGTIAL

Sequences:

>Translated_264_residues
MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETADFRMNYHNADGYPGSMCGNGGRCA
VYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHMLPPKNFRDDLHAGAWSCHFVDTGSPHAIAYVDNLDQMDVFT
EGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLGKVASSPVRVTVRSGETLMVG
FNDAMDEIYLEGPARPVYQGTIAL
>Mature_264_residues
MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETADFRMNYHNADGYPGSMCGNGGRCA
VYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHMLPPKNFRDDLHAGAWSCHFVDTGSPHAIAYVDNLDQMDVFT
EGRTIRNNKEVFPEGTNVNFLEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLGKVASSPVRVTVRSGETLMVG
FNDAMDEIYLEGPARPVYQGTIAL

Specific function: Biosynthesis of lysine from aspartate semialdehyde; sixth step. [C]

COG id: COG0253

COG function: function code E; Diaminopimelate epimerase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the diaminopimelate epimerase family [H]

Homologues:

Organism=Escherichia coli, GI87082334, Length=279, Percent_Identity=31.5412186379928, Blast_Score=123, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001653
- InterPro:   IPR018510 [H]

Pfam domain/function: PF01678 DAP_epimerase [H]

EC number: =5.1.1.7 [H]

Molecular weight: Translated: 28941; Mature: 28941

Theoretical pI: Translated: 4.78; Mature: 4.78

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETADFRM
CEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE
NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML
EECCCCCCCCCCCCCCCEEEEEEEEHHEECCCCCEEEEECCCCEEEEEECCCCCEEEEEE
PPKNFRDDLHAGAWSCHFVDTGSPHAIAYVDNLDQMDVFTEGRTIRNNKEVFPEGTNVNF
CCCCCCHHHCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCEECCCCEECCCCCCEEE
LEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLGKVASSPVRVTVRSGETLMVG
EEEECCCCEEEEHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
FNDAMDEIYLEGPARPVYQGTIAL
CCCCCCEEEEECCCCCCCCEEEEC
>Mature Secondary Structure
MQIEFTKMSGAGNDFIVIDNRQSQFNLEPEQVHAMCTRRTGIGADGLILIEASETADFRM
CEEEEEECCCCCCCEEEECCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCEEEE
NYHNADGYPGSMCGNGGRCAVYFSYLIGIRPAGNRYRFEAGPGTYEAEITGKESVRLHML
EECCCCCCCCCCCCCCCEEEEEEEEHHEECCCCCEEEEECCCCEEEEEECCCCCEEEEEE
PPKNFRDDLHAGAWSCHFVDTGSPHAIAYVDNLDQMDVFTEGRTIRNNKEVFPEGTNVNF
CCCCCCHHHCCCEEEEEEEECCCCEEEEEECCCCCEEEEECCCEECCCCEECCCCCCEEE
LEVTAPDALSIRTFERGVEDETLACGTGTVAAALMSYRLGKVASSPVRVTVRSGETLMVG
EEEECCCCEEEEHHHCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEE
FNDAMDEIYLEGPARPVYQGTIAL
CCCCCCEEEEECCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]