Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
---|---|
Accession | NC_011027 |
Length | 2,289,249 |
Click here to switch to the map view.
The map label for this gene is murI
Identifier: 193213389
GI number: 193213389
Start: 1919542
End: 1920360
Strand: Direct
Name: murI
Synonym: Cpar_1750
Alternate gene names: 193213389
Gene position: 1919542-1920360 (Clockwise)
Preceding gene: 193213388
Following gene: 193213390
Centisome position: 83.85
GC content: 62.39
Gene sequence:
>819_bases ATGTCGCAGCACAAGCTCTCATCCTGCAGCCCGATCGGCATTTTCGACTCGGGCATCGGCGGCCTGACCGTGCTCAAGGC CGTGCAGGCTGCGCTGCCTTCCGAGCGGCTGCTCTATTTCGGCGACACGGCGCGCGTACCGTATGGCACAAAGTCGCAGG TGACGATCCGCAAGTACGCCCGCGAGGACACCGAGCTCTTGATGAAACACCAGCCGAAGCTCATCATCGTGGCCTGCAAC ACCGTCTCGGCGCTGGCGCTCGATGTGGTCGAACAGACCGCTGGCGACATTCTGGTCATCGGCGTGCTGAAGGCTGGGGC GGAGCTTGCCGCGCACCGGACGAAATCGGGGCGCATCGGCGTCATCGGTACCCAGGCCACCATCGGCTCGAACGCTTACT CCTGCGCCATCCGCGAGGAGAACGACGCGCTTGAAGTCACTCCGAAAGCTTGTCCTCTGTTCGTGCCGCTCGCCGAAGAG GGCTTCATCGACCACCCCGCCACCCGGCTTGTCGCTGAAGAGTACCTCTCGGCTTTCACCGGCAAAGAGATCGACACGCT CGTGCTTGGCTGCACCCACTACCCGATTCTCCGCAAGGTCATCGAAAGCATCGCCGGGCCACAGATCACCATCATCGACT CCGCCGAAGCGGTCGCCAGCAAAGCAAAAGAGCTCCTCTCGAAGCACGGCCTGCTGAATCAAAGCTCCGCAACAACGCTG CCCCACCTCATGGTCAGCGACCTCCCCCAGAAATTCCGCGAGCTCTACCGCCTCTTCATGGGCACCGAACTCCCCGACGT CGAACTGGTCGGAATGTAG
Upstream 100 bases:
>100_bases GCAGAAGGCAAAAGAGGCCGGCAAAATGCGCTCCGAAGGCAAGGAGTATATCGTGAAAGACGGGGACGTCATCGTCTTCA GGTTCAACGTGTAAGCAGCC
Downstream 100 bases:
>100_bases GGGCAATTGATAATGCATAATTGATAATTTTAGGGGGCAATCCCGACTTGTCGGAATGCCCTGTCCCGAAAATCCGCGAT GCGCTGTTAATTCGTAGGGA
Product: glutamate racemase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 272; Mature: 271
Protein sequence:
>272_residues MSQHKLSSCSPIGIFDSGIGGLTVLKAVQAALPSERLLYFGDTARVPYGTKSQVTIRKYAREDTELLMKHQPKLIIVACN TVSALALDVVEQTAGDILVIGVLKAGAELAAHRTKSGRIGVIGTQATIGSNAYSCAIREENDALEVTPKACPLFVPLAEE GFIDHPATRLVAEEYLSAFTGKEIDTLVLGCTHYPILRKVIESIAGPQITIIDSAEAVASKAKELLSKHGLLNQSSATTL PHLMVSDLPQKFRELYRLFMGTELPDVELVGM
Sequences:
>Translated_272_residues MSQHKLSSCSPIGIFDSGIGGLTVLKAVQAALPSERLLYFGDTARVPYGTKSQVTIRKYAREDTELLMKHQPKLIIVACN TVSALALDVVEQTAGDILVIGVLKAGAELAAHRTKSGRIGVIGTQATIGSNAYSCAIREENDALEVTPKACPLFVPLAEE GFIDHPATRLVAEEYLSAFTGKEIDTLVLGCTHYPILRKVIESIAGPQITIIDSAEAVASKAKELLSKHGLLNQSSATTL PHLMVSDLPQKFRELYRLFMGTELPDVELVGM >Mature_271_residues SQHKLSSCSPIGIFDSGIGGLTVLKAVQAALPSERLLYFGDTARVPYGTKSQVTIRKYAREDTELLMKHQPKLIIVACNT VSALALDVVEQTAGDILVIGVLKAGAELAAHRTKSGRIGVIGTQATIGSNAYSCAIREENDALEVTPKACPLFVPLAEEG FIDHPATRLVAEEYLSAFTGKEIDTLVLGCTHYPILRKVIESIAGPQITIIDSAEAVASKAKELLSKHGLLNQSSATTLP HLMVSDLPQKFRELYRLFMGTELPDVELVGM
Specific function: Provides the (R)-glutamate required for cell wall biosynthesis
COG id: COG0796
COG function: function code M; Glutamate racemase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aspartate/glutamate racemases family
Homologues:
Organism=Escherichia coli, GI87082355, Length=218, Percent_Identity=28.4403669724771, Blast_Score=76, Evalue=2e-15,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): MURI_CHLP8 (B3QQD9)
Other databases:
- EMBL: CP001099 - RefSeq: YP_001999342.1 - GeneID: 6420693 - GenomeReviews: CP001099_GR - KEGG: cpc:Cpar_1750 - HOGENOM: HBG645102 - OMA: AILGCTH - ProtClustDB: PRK00865 - HAMAP: MF_00258 - InterPro: IPR015942 - InterPro: IPR001920 - InterPro: IPR018187 - InterPro: IPR004391 - Gene3D: G3DSA:3.40.50.1860 - TIGRFAMs: TIGR00067
Pfam domain/function: PF01177 Asp_Glu_race; SSF53681 Asp/Glu_race
EC number: =5.1.1.3
Molecular weight: Translated: 29241; Mature: 29110
Theoretical pI: Translated: 6.40; Mature: 6.40
Prosite motif: PS00923 ASP_GLU_RACEMASE_1; PS00924 ASP_GLU_RACEMASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.8 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 1.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSQHKLSSCSPIGIFDSGIGGLTVLKAVQAALPSERLLYFGDTARVPYGTKSQVTIRKYA CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH REDTELLMKHQPKLIIVACNTVSALALDVVEQTAGDILVIGVLKAGAELAAHRTKSGRIG HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHHCCCCCCEE VIGTQATIGSNAYSCAIREENDALEVTPKACPLFVPLAEEGFIDHPATRLVAEEYLSAFT EEECCEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC GKEIDTLVLGCTHYPILRKVIESIAGPQITIIDSAEAVASKAKELLSKHGLLNQSSATTL CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH PHLMVSDLPQKFRELYRLFMGTELPDVELVGM HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC >Mature Secondary Structure SQHKLSSCSPIGIFDSGIGGLTVLKAVQAALPSERLLYFGDTARVPYGTKSQVTIRKYA CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCHHHHHH REDTELLMKHQPKLIIVACNTVSALALDVVEQTAGDILVIGVLKAGAELAAHRTKSGRIG HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHCCCCEEEEEEHHCCHHHHHHCCCCCCEE VIGTQATIGSNAYSCAIREENDALEVTPKACPLFVPLAEEGFIDHPATRLVAEEYLSAFT EEECCEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHC GKEIDTLVLGCTHYPILRKVIESIAGPQITIIDSAEAVASKAKELLSKHGLLNQSSATTL CCCCCEEEECCCCCHHHHHHHHHHCCCEEEEEECHHHHHHHHHHHHHHCCCCCCCCCCHH PHLMVSDLPQKFRELYRLFMGTELPDVELVGM HHHHHHHHHHHHHHHHHHHHCCCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA