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The map label for this gene is hup [H]

Identifier: 193213379

GI number: 193213379

Start: 1908627

End: 1908929

Strand: Direct

Name: hup [H]

Synonym: Cpar_1740

Alternate gene names: 193213379

Gene position: 1908627-1908929 (Clockwise)

Preceding gene: 193213378

Following gene: 193213383

Centisome position: 83.37

GC content: 53.47

Gene sequence:

>303_bases
ATGGGACAGACTACCACCAAAGCCGACCTGGTGAACGTGATCGCCCAGCGGACAGGTCTGACAAAGCATGAAACGGAATC
GGTCGTCGATTGCCTGTTCGAAAGCATCATCGACTCACTCAAAGCTGGCAAACGAATCGAAATCCGGGGGTTCGGATCGT
TTAACATCCGCTACAAGAACCTGCGGCAGGCCCGAAACCCCAGAACCGGTGAAAAAGTCACCGTAGGGCCGAAGAACGTT
CCGACCTTCAAAATCTCCAAAGAGTTCAAACACGCCGTAAGCGAGAGCCTGAAAGCCGAGTAG

Upstream 100 bases:

>100_bases
ACTGCGGCGGATGTTCGCTGTTTTTCTTGTCTTCGTAGCCATCCGCCTTTGGCTTTAATCTGTACAGTACCTGCAATCTA
TAACCAAAGCATACACTACC

Downstream 100 bases:

>100_bases
AAAGCTGTCTTGCTGCCGTCAGACAGAAGTACAATCCGGTCATTCCGTTGTGTTGTGCAGAATGACCGGTCAGGTGAAAA
GAATTGGCTACCGGTTGAAC

Product: histone family protein DNA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 100; Mature: 99

Protein sequence:

>100_residues
MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQARNPRTGEKVTVGPKNV
PTFKISKEFKHAVSESLKAE

Sequences:

>Translated_100_residues
MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQARNPRTGEKVTVGPKNV
PTFKISKEFKHAVSESLKAE
>Mature_99_residues
GQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKNLRQARNPRTGEKVTVGPKNVP
TFKISKEFKHAVSESLKAE

Specific function: Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions [H]

COG id: COG0776

COG function: function code L; Bacterial nucleoid DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial histone-like protein family [H]

Homologues:

Organism=Escherichia coli, GI1787141, Length=86, Percent_Identity=41.8604651162791, Blast_Score=72, Evalue=9e-15,
Organism=Escherichia coli, GI1790433, Length=87, Percent_Identity=34.4827586206897, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1788005, Length=88, Percent_Identity=35.2272727272727, Blast_Score=70, Evalue=3e-14,
Organism=Escherichia coli, GI1786644, Length=88, Percent_Identity=32.9545454545455, Blast_Score=67, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000119
- InterPro:   IPR020816
- InterPro:   IPR010992 [H]

Pfam domain/function: PF00216 Bac_DNA_binding [H]

EC number: NA

Molecular weight: Translated: 11163; Mature: 11032

Theoretical pI: Translated: 10.59; Mature: 10.59

Prosite motif: PS00045 HISTONE_LIKE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN
CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHH
LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKAE
HHHHCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
GQTTTKADLVNVIAQRTGLTKHETESVVDCLFESIIDSLKAGKRIEIRGFGSFNIRYKN
CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCEEHHH
LRQARNPRTGEKVTVGPKNVPTFKISKEFKHAVSESLKAE
HHHHCCCCCCCEEEECCCCCCEEEHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA