Definition Chlorobaculum parvum NCIB 8327 chromosome, complete genome.
Accession NC_011027
Length 2,289,249

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The map label for this gene is rfbH [H]

Identifier: 193213096

GI number: 193213096

Start: 1587124

End: 1588416

Strand: Direct

Name: rfbH [H]

Synonym: Cpar_1451

Alternate gene names: 193213096

Gene position: 1587124-1588416 (Clockwise)

Preceding gene: 193213095

Following gene: 193213097

Centisome position: 69.33

GC content: 51.28

Gene sequence:

>1293_bases
ATGACAAACAAGGCAGAAGCTCTGAAGCAGGAGATCCTGAACAAAACCAGAGAGTACTACGAACTGGTGCACAAGCCTGC
TCAGCAAGCCCCATTTCAACCCGGTCAGTCACGGGTGGCTTACGCCGGCAGGGTGTTCGATGCGCAGGAGATGGTCAACC
TTGTTGACAGTTCACTGGAATTCTGGCTGACCTCCGGGCGGTATGCCGAGCAGTTTGAAAAAGAGTTTGCAACATTTCTT
GGTGTTCAATATTGCTCCCTTACCAATTCCGGTTCCTCTGCAAACCTGTTGGCCTTTATGGCGCTTACTTCACCGAAACT
CGGCGAGCGCCGGATAAAGCCGGGTGATGAAGTCATAACGGTAGCTGCCGGCTTTCCAACCACGGTAGCCCCGATTATCC
AGTATGGAGCCATTCCGGTCTTTGTGGATGTTGTACTGCCGACCTGTAACATAGATTGCTCGCAGCTTGAACTTGCTCTA
TCGGATAAAACGAAAGCCGTCATGCTGGCACACACGCTGGGCAACCCTTTTGATCTTGCAACAGTCAAGGCGTTCTGTGA
TGCCAACAATCTGTGGCTGATAGAAGACAATTGCGATGCTCTTGGATCGCGCTATGAGTTGAACGGGAAATGGCGATATA
CCGGAACCATTGGCCATATAGGCACCTCCAGTTTTTATCCCCCACACCATATGACCATGGGTGAAGGTGGGGCTATCTAC
ACTGATGATCCGCTGCTTAAAAGGTTGATCGATTCATTCCGGGACTGGGGTCGAGACTGCTGGTGCCCTTCAGGCAGGGA
CAACACCTGCGGGAACCGCTTTGGGCAGCAGTTTGGAGAGCTTCCGTTCGGTTACGATCACAAATATGTTTATTCGCATT
TCGGATACAATCTGAAAGTGACCGATATGCAGGCCGCCATTGGGTGCGCTCAACTTGAAAAACTGCCGGACTTCATTGCT
GCACGCAAAAAAAACTGGCAGATGCTTCGTGATGGGCTGGCGCCCCTGGAAGACCGGTTCATATTGCCCGAGGCGACAAA
AGACAGCGAGCCATCATGGTTCGGATTCTTGATGACGGTAAGAGAAAATGCAGGTATTACACGCGACCAGATGGTCAACC
ATCTTGAGGCTAACGGAATCCAGACCAGAATGCTATTTGCCGGGAATCTCGTCAAACACCCATGTTTTGATGAGATGCGT
CGCGACCGAAAAGGCTACCGGGTGGTGAGGGGGCTAAAAGTCACCGACAAAATCATGCGAGATACTTTCTGGTTGGGGTG
TATCCGGGAATGA

Upstream 100 bases:

>100_bases
GAACAGGCCGCGCGCAAGATTTTTGTGAACGTTCTGGCAGCCGAAGACGATCAGATTATTGCGTTATAACCACAAGCAGA
AACAGGAGCCCGGATAATTG

Downstream 100 bases:

>100_bases
GCGAGGAAAAAATTTCCTGGATTATACAAGTTCTATCAAAAAAGGTAGAAGGAAGATGATTGAACAAAAAAAAAGAGTTG
TCAAGGGCGTGTCCTGTTTG

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: TDP-D-fucosamine; 2-oxoglutarate [C]

Alternate protein names: NA

Number of amino acids: Translated: 430; Mature: 429

Protein sequence:

>430_residues
MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFL
GVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELAL
SDKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY
TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIA
ARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMR
RDRKGYRVVRGLKVTDKIMRDTFWLGCIRE

Sequences:

>Translated_430_residues
MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFL
GVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELAL
SDKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY
TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIA
ARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMR
RDRKGYRVVRGLKVTDKIMRDTFWLGCIRE
>Mature_429_residues
TNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFLG
VQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALS
DKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIYT
DDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIAA
RKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRR
DRKGYRVVRGLKVTDKIMRDTFWLGCIRE

Specific function: Involved In Eca Elongation. [C]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI2367285, Length=226, Percent_Identity=35.3982300884956, Blast_Score=107, Evalue=2e-24,
Organism=Escherichia coli, GI145693159, Length=328, Percent_Identity=28.0487804878049, Blast_Score=102, Evalue=4e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 48534; Mature: 48403

Theoretical pI: Translated: 6.77; Mature: 6.77

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLE
CCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEHHCCCCCHHHHHHHHHHHHH
FWLTSGRYAEQFEKEFATFLGVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVIT
HHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE
VAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALSDKTKAVMLAHTLGNPFDLA
EECCCCHHHHHHHHHCCHHEEEEEHHCCCCCCHHHHEEEECCCCCEEEEEECCCCCCHHH
TVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY
HHHHHCCCCCEEEEECCHHHCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE
TDMQAAIGCAQLEKLPDFIAARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTV
EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEE
RENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRRDRKGYRVVRGLKVTDKIMR
ECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
DTFWLGCIRE
HHHHHHCCCC
>Mature Secondary Structure 
TNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLE
CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEHHCCCCCHHHHHHHHHHHHH
FWLTSGRYAEQFEKEFATFLGVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVIT
HHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE
VAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALSDKTKAVMLAHTLGNPFDLA
EECCCCHHHHHHHHHCCHHEEEEEHHCCCCCCHHHHEEEECCCCCEEEEEECCCCCCHHH
TVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY
HHHHHCCCCCEEEEECCHHHCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE
TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKV
CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE
TDMQAAIGCAQLEKLPDFIAARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTV
EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEE
RENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRRDRKGYRVVRGLKVTDKIMR
ECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH
DTFWLGCIRE
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]

Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]

General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 1710759; 11677609 [H]