Definition | Chlorobaculum parvum NCIB 8327 chromosome, complete genome. |
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Accession | NC_011027 |
Length | 2,289,249 |
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The map label for this gene is rfbH [H]
Identifier: 193213096
GI number: 193213096
Start: 1587124
End: 1588416
Strand: Direct
Name: rfbH [H]
Synonym: Cpar_1451
Alternate gene names: 193213096
Gene position: 1587124-1588416 (Clockwise)
Preceding gene: 193213095
Following gene: 193213097
Centisome position: 69.33
GC content: 51.28
Gene sequence:
>1293_bases ATGACAAACAAGGCAGAAGCTCTGAAGCAGGAGATCCTGAACAAAACCAGAGAGTACTACGAACTGGTGCACAAGCCTGC TCAGCAAGCCCCATTTCAACCCGGTCAGTCACGGGTGGCTTACGCCGGCAGGGTGTTCGATGCGCAGGAGATGGTCAACC TTGTTGACAGTTCACTGGAATTCTGGCTGACCTCCGGGCGGTATGCCGAGCAGTTTGAAAAAGAGTTTGCAACATTTCTT GGTGTTCAATATTGCTCCCTTACCAATTCCGGTTCCTCTGCAAACCTGTTGGCCTTTATGGCGCTTACTTCACCGAAACT CGGCGAGCGCCGGATAAAGCCGGGTGATGAAGTCATAACGGTAGCTGCCGGCTTTCCAACCACGGTAGCCCCGATTATCC AGTATGGAGCCATTCCGGTCTTTGTGGATGTTGTACTGCCGACCTGTAACATAGATTGCTCGCAGCTTGAACTTGCTCTA TCGGATAAAACGAAAGCCGTCATGCTGGCACACACGCTGGGCAACCCTTTTGATCTTGCAACAGTCAAGGCGTTCTGTGA TGCCAACAATCTGTGGCTGATAGAAGACAATTGCGATGCTCTTGGATCGCGCTATGAGTTGAACGGGAAATGGCGATATA CCGGAACCATTGGCCATATAGGCACCTCCAGTTTTTATCCCCCACACCATATGACCATGGGTGAAGGTGGGGCTATCTAC ACTGATGATCCGCTGCTTAAAAGGTTGATCGATTCATTCCGGGACTGGGGTCGAGACTGCTGGTGCCCTTCAGGCAGGGA CAACACCTGCGGGAACCGCTTTGGGCAGCAGTTTGGAGAGCTTCCGTTCGGTTACGATCACAAATATGTTTATTCGCATT TCGGATACAATCTGAAAGTGACCGATATGCAGGCCGCCATTGGGTGCGCTCAACTTGAAAAACTGCCGGACTTCATTGCT GCACGCAAAAAAAACTGGCAGATGCTTCGTGATGGGCTGGCGCCCCTGGAAGACCGGTTCATATTGCCCGAGGCGACAAA AGACAGCGAGCCATCATGGTTCGGATTCTTGATGACGGTAAGAGAAAATGCAGGTATTACACGCGACCAGATGGTCAACC ATCTTGAGGCTAACGGAATCCAGACCAGAATGCTATTTGCCGGGAATCTCGTCAAACACCCATGTTTTGATGAGATGCGT CGCGACCGAAAAGGCTACCGGGTGGTGAGGGGGCTAAAAGTCACCGACAAAATCATGCGAGATACTTTCTGGTTGGGGTG TATCCGGGAATGA
Upstream 100 bases:
>100_bases GAACAGGCCGCGCGCAAGATTTTTGTGAACGTTCTGGCAGCCGAAGACGATCAGATTATTGCGTTATAACCACAAGCAGA AACAGGAGCCCGGATAATTG
Downstream 100 bases:
>100_bases GCGAGGAAAAAATTTCCTGGATTATACAAGTTCTATCAAAAAAGGTAGAAGGAAGATGATTGAACAAAAAAAAAGAGTTG TCAAGGGCGTGTCCTGTTTG
Product: DegT/DnrJ/EryC1/StrS aminotransferase
Products: TDP-D-fucosamine; 2-oxoglutarate [C]
Alternate protein names: NA
Number of amino acids: Translated: 430; Mature: 429
Protein sequence:
>430_residues MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFL GVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELAL SDKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIA ARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMR RDRKGYRVVRGLKVTDKIMRDTFWLGCIRE
Sequences:
>Translated_430_residues MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFL GVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELAL SDKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIA ARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMR RDRKGYRVVRGLKVTDKIMRDTFWLGCIRE >Mature_429_residues TNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLEFWLTSGRYAEQFEKEFATFLG VQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVITVAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALS DKTKAVMLAHTLGNPFDLATVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIYT DDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKVTDMQAAIGCAQLEKLPDFIAA RKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTVRENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRR DRKGYRVVRGLKVTDKIMRDTFWLGCIRE
Specific function: Involved In Eca Elongation. [C]
COG id: COG0399
COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the degT/dnrJ/eryC1 family [H]
Homologues:
Organism=Escherichia coli, GI2367285, Length=226, Percent_Identity=35.3982300884956, Blast_Score=107, Evalue=2e-24, Organism=Escherichia coli, GI145693159, Length=328, Percent_Identity=28.0487804878049, Blast_Score=102, Evalue=4e-23,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000653 - InterPro: IPR015424 - InterPro: IPR015421 - InterPro: IPR015422 [H]
Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]
EC number: NA
Molecular weight: Translated: 48534; Mature: 48403
Theoretical pI: Translated: 6.77; Mature: 6.77
Prosite motif: PS00213 LIPOCALIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 5.6 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 5.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLE CCCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEHHCCCCCHHHHHHHHHHHHH FWLTSGRYAEQFEKEFATFLGVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVIT HHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE VAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALSDKTKAVMLAHTLGNPFDLA EECCCCHHHHHHHHHCCHHEEEEEHHCCCCCCHHHHEEEECCCCCEEEEEECCCCCCHHH TVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY HHHHHCCCCCEEEEECCHHHCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKV CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE TDMQAAIGCAQLEKLPDFIAARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTV EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEE RENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRRDRKGYRVVRGLKVTDKIMR ECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH DTFWLGCIRE HHHHHHCCCC >Mature Secondary Structure TNKAEALKQEILNKTREYYELVHKPAQQAPFQPGQSRVAYAGRVFDAQEMVNLVDSSLE CCHHHHHHHHHHHHHHHHHHHHHCHHHHCCCCCCCCCEEHHCCCCCHHHHHHHHHHHHH FWLTSGRYAEQFEKEFATFLGVQYCSLTNSGSSANLLAFMALTSPKLGERRIKPGDEVIT HHCCCCHHHHHHHHHHHHHHHHHHEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEE VAAGFPTTVAPIIQYGAIPVFVDVVLPTCNIDCSQLELALSDKTKAVMLAHTLGNPFDLA EECCCCHHHHHHHHHCCHHEEEEEHHCCCCCCHHHHEEEECCCCCEEEEEECCCCCCHHH TVKAFCDANNLWLIEDNCDALGSRYELNGKWRYTGTIGHIGTSSFYPPHHMTMGEGGAIY HHHHHCCCCCEEEEECCHHHCCCEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEE TDDPLLKRLIDSFRDWGRDCWCPSGRDNTCGNRFGQQFGELPFGYDHKYVYSHFGYNLKV CCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCCCCHHHHHCCCCEEE TDMQAAIGCAQLEKLPDFIAARKKNWQMLRDGLAPLEDRFILPEATKDSEPSWFGFLMTV EHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCEECCCCCCCCCCCCEEEEEEE RENAGITRDQMVNHLEANGIQTRMLFAGNLVKHPCFDEMRRDRKGYRVVRGLKVTDKIMR ECCCCCCHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHH DTFWLGCIRE HHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: dTDP-4-dehydro-6-deoxy-D-glucose; L-glutamate [C]
Specific reaction: dTDP-4-dehydro-6-deoxy-D-glucose + L-glutamate = TDP-D-fucosamine + 2-oxoglutarate [C]
General reaction: Carbon-Oxygen Lyases; Hydro-Lyases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1710759; 11677609 [H]