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The map label for this gene is 193212987

Identifier: 193212987

GI number: 193212987

Start: 1452160

End: 1453566

Strand: Direct

Name: 193212987

Synonym: Cpar_1337

Alternate gene names: NA

Gene position: 1452160-1453566 (Clockwise)

Preceding gene: 193212986

Following gene: 193212989

Centisome position: 63.43

GC content: 56.01

Gene sequence:

>1407_bases
ATGCTGGCAGAAGATCTTCAGACCGCCGAATCGACCGTTTCCCGTTCCGACAGTGCGGGCCCGTCCCTCGAACAACTCGC
CGCCGCACAGAAGACCCGGAAAAAATGGCTGCTCATCCAGCCCAAGAGCCAGACCAGCATGATGGTCGATTCCGGTACGG
TCAGCATGCCCCTGAACCTCATCATGGTTGCCACGCTGGCCAGCAAGTATTTCGACATCACCTTCCTCGATGAGCGAACC
GGCGACACGATTCCGCAGGACTTCTCGGGCTTCGACGTTGTGGCGATCACCTCGCGCACGCTCAACGCCACGAACGCCTA
CCGCATCGGCGACCGCGCGAAAGCGCAGGGCAAAATCGTGCTGCTCGGCGGCGTTCACCCCACAATGCTGCACGACGAAG
CCGCATCGCATTGCACCAGCGTCATTTACGGCGAGATCGAATCGGTCTGGGACGAACTTGCCCGCGATATTTTTCAGGGT
ACAATGAAGAGCTTCTACAAATCCAGCGATTTGCGTCCGATGACCAACATGACGCCTCCGGATTTCAGCTTTGCCCTGAA
TTCTCCACACGCAAAAAAATACAGCCAGCTTATCCCGATTCTGGCCACCAAAGGCTGCCCGGTTGGATGCAGCTTCTGCA
CCACGCCGACGGTGTATGGCAAAAGCTACCGCTACCGCGAAATCGATCTGGTGCTTGACGAAATGCGCGCCCATCAGGAG
CGGCTTGGCAAAGAGAAGGTGCGCTTCTCCTTCATGGACGACAACATCAGTTTCAGGCCGAAATACTTCATGGAGCTGCT
CGAAGGAATGGCCAAGCTCGGCGTGCGCTGGAATGCCAACATCTCGATGAACTTCCTGCACAAACCAGAGGTGGCCGAAG
TAGCCGGGCGTTCGGGCTGCGACCTCATGAGCATCGGCTTCGAATCGCTCAATCCCGACATTCTCAAAACCATGAACAAG
GGTTCGAACCGCCTGCAAAACTATGAAACGGCGGTGAACAACCTGCACAAGAACAAGATCGCCATCCAGGGCTACTTCAT
GTTCGGCTTCGACGATGACAACGAAAAGAGCTTCCAGGCGACCTACGACTTCATCATGCAGAACCGCATCGAGTTCCCGG
TCTTCTCGCTCGTCACGCCCTTCCCCGGCACCCCCTATTTCGAGGAGATGAAAGACAGGGTACGCCACCTCGATTGGGAC
AAGTACGACACCTACCACTACATGTTCGAGCCGAAAAAGCTCGGCGGCGAAAAGCTGCTCGAAAATTTCATCAAACTTCA
GCGCGAAGTCTACAAAGGCAGCGCCATCATGAAGCGCATGCAGGGCAAACCCGTCAACTGGGTCTGGTTCGTCAACTTCC
TCATGAACCGCTTCACCCGCAAACTCACGCCGGAGATCTATCTCTGA

Upstream 100 bases:

>100_bases
ATGTCATGAATGCTCCCTCTCCAGAGGCTTTCCGGATAGGGACGACAGACGTCAATTTTTCACGCTGCCCTGAAATCATT
ACCACTTATTGAGTATAGGC

Downstream 100 bases:

>100_bases
AGTCCTGAACTCACCAGTTGACGGAATCAGCAAAAACTGAAAATCCCACAAGACAGCACGTCGTGTGGGATTTTTTCTGT
TCCCCTGTTTTCATCGATAG

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MLAEDLQTAESTVSRSDSAGPSLEQLAAAQKTRKKWLLIQPKSQTSMMVDSGTVSMPLNLIMVATLASKYFDITFLDERT
GDTIPQDFSGFDVVAITSRTLNATNAYRIGDRAKAQGKIVLLGGVHPTMLHDEAASHCTSVIYGEIESVWDELARDIFQG
TMKSFYKSSDLRPMTNMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQE
RLGKEKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLHKPEVAEVAGRSGCDLMSIGFESLNPDILKTMNK
GSNRLQNYETAVNNLHKNKIAIQGYFMFGFDDDNEKSFQATYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRVRHLDWD
KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPVNWVWFVNFLMNRFTRKLTPEIYL

Sequences:

>Translated_468_residues
MLAEDLQTAESTVSRSDSAGPSLEQLAAAQKTRKKWLLIQPKSQTSMMVDSGTVSMPLNLIMVATLASKYFDITFLDERT
GDTIPQDFSGFDVVAITSRTLNATNAYRIGDRAKAQGKIVLLGGVHPTMLHDEAASHCTSVIYGEIESVWDELARDIFQG
TMKSFYKSSDLRPMTNMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQE
RLGKEKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLHKPEVAEVAGRSGCDLMSIGFESLNPDILKTMNK
GSNRLQNYETAVNNLHKNKIAIQGYFMFGFDDDNEKSFQATYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRVRHLDWD
KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPVNWVWFVNFLMNRFTRKLTPEIYL
>Mature_468_residues
MLAEDLQTAESTVSRSDSAGPSLEQLAAAQKTRKKWLLIQPKSQTSMMVDSGTVSMPLNLIMVATLASKYFDITFLDERT
GDTIPQDFSGFDVVAITSRTLNATNAYRIGDRAKAQGKIVLLGGVHPTMLHDEAASHCTSVIYGEIESVWDELARDIFQG
TMKSFYKSSDLRPMTNMTPPDFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQE
RLGKEKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLHKPEVAEVAGRSGCDLMSIGFESLNPDILKTMNK
GSNRLQNYETAVNNLHKNKIAIQGYFMFGFDDDNEKSFQATYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRVRHLDWD
KYDTYHYMFEPKKLGGEKLLENFIKLQREVYKGSAIMKRMQGKPVNWVWFVNFLMNRFTRKLTPEIYL

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 B12-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006158
- InterPro:   IPR006638
- InterPro:   IPR005839
- InterPro:   IPR007197 [H]

Pfam domain/function: PF02310 B12-binding; PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 53549; Mature: 53549

Theoretical pI: Translated: 8.18; Mature: 8.18

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLAEDLQTAESTVSRSDSAGPSLEQLAAAQKTRKKWLLIQPKSQTSMMVDSGTVSMPLNL
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCHHH
IMVATLASKYFDITFLDERTGDTIPQDFSGFDVVAITSRTLNATNAYRIGDRAKAQGKIV
HHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCEE
LLGGVHPTMLHDEAASHCTSVIYGEIESVWDELARDIFQGTMKSFYKSSDLRPMTNMTPP
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQE
CCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
RLGKEKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLHKPEVAEVAGRSGC
HHCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHHCCCCCC
DLMSIGFESLNPDILKTMNKGSNRLQNYETAVNNLHKNKIAIQGYFMFGFDDDNEKSFQA
CCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHH
TYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRVRHLDWDKYDTYHYMFEPKKLGGEKLL
HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHH
ENFIKLQREVYKGSAIMKRMQGKPVNWVWFVNFLMNRFTRKLTPEIYL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MLAEDLQTAESTVSRSDSAGPSLEQLAAAQKTRKKWLLIQPKSQTSMMVDSGTVSMPLNL
CCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCEEEEECCCCCCEEEECCCCCCCHHH
IMVATLASKYFDITFLDERTGDTIPQDFSGFDVVAITSRTLNATNAYRIGDRAKAQGKIV
HHHHHHHHHHEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCEECCCCCCCCCCEE
LLGGVHPTMLHDEAASHCTSVIYGEIESVWDELARDIFQGTMKSFYKSSDLRPMTNMTPP
EEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
DFSFALNSPHAKKYSQLIPILATKGCPVGCSFCTTPTVYGKSYRYREIDLVLDEMRAHQE
CCEEECCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHH
RLGKEKVRFSFMDDNISFRPKYFMELLEGMAKLGVRWNANISMNFLHKPEVAEVAGRSGC
HHCHHHEEEEEECCCCCCCHHHHHHHHHHHHHHCCEECCCEEEEECCCCCHHHHCCCCCC
DLMSIGFESLNPDILKTMNKGSNRLQNYETAVNNLHKNKIAIQGYFMFGFDDDNEKSFQA
CCCCCCHHHCCHHHHHHHHCCHHHHHHHHHHHHHHHCCEEEEEEEEEEEECCCCCCHHHH
TYDFIMQNRIEFPVFSLVTPFPGTPYFEEMKDRVRHLDWDKYDTYHYMFEPKKLGGEKLL
HHHHHHHCCCCCCHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEECHHHCCHHHHH
ENFIKLQREVYKGSAIMKRMQGKPVNWVWFVNFLMNRFTRKLTPEIYL
HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231 [H]