BacMap

Definition	Chlorobaculum parvum NCIB 8327 chromosome, complete genome.
Accession	NC_011027
Length	2,289,249

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The map label for this gene is ydfG [C]

Identifier: 193212976

GI number: 193212976

Start: 1440937

End: 1441647

Strand: Direct

Name: ydfG [C]

Synonym: Cpar_1326

Alternate gene names: 193212976

Gene position: 1440937-1441647 (Clockwise)

Preceding gene: 193212975

Following gene: 193212979

Centisome position: 62.94

GC content: 62.03

Gene sequence:

>711_bases
ATGAGTACTTCAGATAACGGAAAGGTTCTTCTCATAACCGGGGCTTCGACCGGCATCGGGCGTTCGACGGCGATTCAGGC
CGTGGAGGCGGGCTGGCGGGTCGTGGTGGCAGCGCGGTCGGCGGAAAAGCTGACGGCGCTTGTCGATGAACTCGGCGCCG
AGCGGGCAATAGCCGTGCCGTGCGACGTGGCGGAATGGGAACAGCAGGAGGCGATGGTGCAGAAAACCATCGAGCGCTTC
GGCAGACTCGACGCGGTTTTCGCCAATGCGGGATTTTCAAATGGATCGTCTTTCATCGAGGGCGAGCACAGACCCAACGA
GTGGCGCGACATGGTGATGACCAACGTTTTCGGCGCGGCAGCCACGGCGCGCCTCACGCTGCCGGAGCTGGTCAAAACCG
GGGGACATTTCCTCGTGACGGGTTCGGTTCTGGGCCGGGTTACCTCGATGCGAAACCTCTACGGAGCCACCAAATGGGCG
GTAACCGGCATGGCGCAGGCGATCCGCAACGAAGTGGCAAGCAAGGGCGTGCGGGTCACGTTGGTCGAGCCGGGCATTGT
GGATACGCCGTTCTGGGATGGCTTGCAGAAACCGGTCGCTCCGGAACTGCTTCCGGACGACGTGGCGCGAGGCGTGATGT
ACGCTCTCAGCCAGCCTCCGCATGTGGATGTAAGTGAAATCATTATCAGGCCGACCGGACAGGCTCACTGA

Upstream 100 bases:

>100_bases
TGCTTGCCCAGATCATACGAGAAGTACTGAAAGGCAAATCTCCTCAGTAAACTTATAGCGCCAAACATGAACGCTTAAAT
CACCATACAAATAGCACATT

Downstream 100 bases:

>100_bases
AAAAATCGATCAGACACAGGAAAGCCGGGATAAAGGTAATCCCGGCTTTCCTGCTTTCAGCGGTTATTTTGTCTGTGAAC
GGCTCAGCTTCTCTTCCAGT

Product: short-chain dehydrogenase/reductase SDR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 236; Mature: 235

Protein sequence:

>236_residues
MSTSDNGKVLLITGASTGIGRSTAIQAVEAGWRVVVAARSAEKLTALVDELGAERAIAVPCDVAEWEQQEAMVQKTIERF
GRLDAVFANAGFSNGSSFIEGEHRPNEWRDMVMTNVFGAAATARLTLPELVKTGGHFLVTGSVLGRVTSMRNLYGATKWA
VTGMAQAIRNEVASKGVRVTLVEPGIVDTPFWDGLQKPVAPELLPDDVARGVMYALSQPPHVDVSEIIIRPTGQAH

Sequences:

>Translated_236_residues
MSTSDNGKVLLITGASTGIGRSTAIQAVEAGWRVVVAARSAEKLTALVDELGAERAIAVPCDVAEWEQQEAMVQKTIERF
GRLDAVFANAGFSNGSSFIEGEHRPNEWRDMVMTNVFGAAATARLTLPELVKTGGHFLVTGSVLGRVTSMRNLYGATKWA
VTGMAQAIRNEVASKGVRVTLVEPGIVDTPFWDGLQKPVAPELLPDDVARGVMYALSQPPHVDVSEIIIRPTGQAH
>Mature_235_residues
STSDNGKVLLITGASTGIGRSTAIQAVEAGWRVVVAARSAEKLTALVDELGAERAIAVPCDVAEWEQQEAMVQKTIERFG
RLDAVFANAGFSNGSSFIEGEHRPNEWRDMVMTNVFGAAATARLTLPELVKTGGHFLVTGSVLGRVTSMRNLYGATKWAV
TGMAQAIRNEVASKGVRVTLVEPGIVDTPFWDGLQKPVAPELLPDDVARGVMYALSQPPHVDVSEIIIRPTGQAH

Specific function: Unknown

COG id: COG4221

COG function: function code R; Short-chain alcohol dehydrogenase of unknown specificity

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI109715829, Length=254, Percent_Identity=31.496062992126, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI59889578, Length=198, Percent_Identity=33.3333333333333, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI40254992, Length=224, Percent_Identity=28.125, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI19923817, Length=239, Percent_Identity=25.5230125523013, Blast_Score=79, Evalue=5e-15,
Organism=Homo sapiens, GI31542939, Length=206, Percent_Identity=27.1844660194175, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI20149619, Length=191, Percent_Identity=27.2251308900524, Blast_Score=72, Evalue=5e-13,
Organism=Homo sapiens, GI32455239, Length=190, Percent_Identity=30.5263157894737, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI5031765, Length=190, Percent_Identity=30.5263157894737, Blast_Score=71, Evalue=9e-13,
Organism=Homo sapiens, GI7706318, Length=190, Percent_Identity=26.3157894736842, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI40807363, Length=209, Percent_Identity=27.7511961722488, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI38348362, Length=182, Percent_Identity=28.021978021978, Blast_Score=68, Evalue=7e-12,
Organism=Homo sapiens, GI209862901, Length=241, Percent_Identity=29.045643153527, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI19923983, Length=241, Percent_Identity=29.045643153527, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI38424085, Length=182, Percent_Identity=28.5714285714286, Blast_Score=67, Evalue=2e-11,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=26.8421052631579, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=26.8421052631579, Blast_Score=65, Evalue=7e-11,
Organism=Homo sapiens, GI4503817, Length=226, Percent_Identity=23.4513274336283, Blast_Score=64, Evalue=8e-11,
Organism=Homo sapiens, GI40548397, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010158, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI214010156, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=9e-11,
Organism=Homo sapiens, GI22758144, Length=194, Percent_Identity=28.3505154639175, Blast_Score=64, Evalue=9e-11,
Organism=Escherichia coli, GI1787820, Length=245, Percent_Identity=31.0204081632653, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1787335, Length=216, Percent_Identity=28.7037037037037, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082100, Length=226, Percent_Identity=29.646017699115, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI1787905, Length=232, Percent_Identity=28.0172413793103, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786701, Length=199, Percent_Identity=28.1407035175879, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787526, Length=187, Percent_Identity=29.4117647058824, Blast_Score=70, Evalue=9e-14,
Organism=Escherichia coli, GI1789378, Length=192, Percent_Identity=27.6041666666667, Blast_Score=64, Evalue=7e-12,
Organism=Escherichia coli, GI1788459, Length=209, Percent_Identity=26.3157894736842, Blast_Score=64, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17562910, Length=194, Percent_Identity=30.4123711340206, Blast_Score=89, Evalue=2e-18,
Organism=Caenorhabditis elegans, GI17538480, Length=206, Percent_Identity=30.5825242718447, Blast_Score=87, Evalue=7e-18,
Organism=Caenorhabditis elegans, GI17563726, Length=199, Percent_Identity=26.1306532663317, Blast_Score=80, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=204, Percent_Identity=31.8627450980392, Blast_Score=79, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI17562908, Length=202, Percent_Identity=28.2178217821782, Blast_Score=79, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI193204405, Length=202, Percent_Identity=27.7227722772277, Blast_Score=78, Evalue=3e-15,
Organism=Caenorhabditis elegans, GI17561402, Length=247, Percent_Identity=25.1012145748988, Blast_Score=77, Evalue=6e-15,
Organism=Caenorhabditis elegans, GI17560220, Length=208, Percent_Identity=28.8461538461538, Blast_Score=77, Evalue=9e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=202, Percent_Identity=27.7227722772277, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562906, Length=204, Percent_Identity=27.4509803921569, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=192, Percent_Identity=31.25, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=197, Percent_Identity=30.9644670050761, Blast_Score=74, Evalue=6e-14,
Organism=Caenorhabditis elegans, GI17560150, Length=201, Percent_Identity=27.8606965174129, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=200, Percent_Identity=25.5, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI72000259, Length=194, Percent_Identity=25.2577319587629, Blast_Score=71, Evalue=6e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=195, Percent_Identity=27.1794871794872, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17564282, Length=208, Percent_Identity=28.8461538461538, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17531453, Length=247, Percent_Identity=27.9352226720648, Blast_Score=68, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=200, Percent_Identity=27, Blast_Score=67, Evalue=9e-12,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=30.3664921465969, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71994600, Length=188, Percent_Identity=26.063829787234, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17567345, Length=194, Percent_Identity=25.7731958762887, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI25147288, Length=232, Percent_Identity=23.7068965517241, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=198, Percent_Identity=25.7575757575758, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI17507613, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=4e-11,
Organism=Caenorhabditis elegans, GI32563809, Length=194, Percent_Identity=27.319587628866, Blast_Score=64, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71994604, Length=187, Percent_Identity=25.1336898395722, Blast_Score=64, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=240, Percent_Identity=26.6666666666667, Blast_Score=64, Evalue=9e-11,
Organism=Saccharomyces cerevisiae, GI6323882, Length=248, Percent_Identity=29.8387096774194, Blast_Score=102, Evalue=7e-23,
Organism=Saccharomyces cerevisiae, GI6322227, Length=204, Percent_Identity=29.4117647058824, Blast_Score=87, Evalue=2e-18,
Organism=Saccharomyces cerevisiae, GI6322226, Length=198, Percent_Identity=30.3030303030303, Blast_Score=79, Evalue=9e-16,
Organism=Saccharomyces cerevisiae, GI6324126, Length=199, Percent_Identity=28.1407035175879, Blast_Score=72, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24648944, Length=236, Percent_Identity=34.7457627118644, Blast_Score=117, Evalue=7e-27,
Organism=Drosophila melanogaster, GI24641232, Length=246, Percent_Identity=31.7073170731707, Blast_Score=110, Evalue=6e-25,
Organism=Drosophila melanogaster, GI116007236, Length=245, Percent_Identity=30.6122448979592, Blast_Score=105, Evalue=2e-23,
Organism=Drosophila melanogaster, GI24663911, Length=245, Percent_Identity=32.6530612244898, Blast_Score=104, Evalue=4e-23,
Organism=Drosophila melanogaster, GI281364494, Length=245, Percent_Identity=32.6530612244898, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI116007234, Length=242, Percent_Identity=30.5785123966942, Blast_Score=98, Evalue=5e-21,
Organism=Drosophila melanogaster, GI28571387, Length=246, Percent_Identity=29.2682926829268, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI21358495, Length=245, Percent_Identity=28.9795918367347, Blast_Score=93, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24641388, Length=250, Percent_Identity=30.8, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI24648693, Length=245, Percent_Identity=30.6122448979592, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI21355889, Length=245, Percent_Identity=30.6122448979592, Blast_Score=91, Evalue=5e-19,
Organism=Drosophila melanogaster, GI28571526, Length=232, Percent_Identity=31.4655172413793, Blast_Score=85, Evalue=4e-17,
Organism=Drosophila melanogaster, GI21357041, Length=226, Percent_Identity=30.5309734513274, Blast_Score=84, Evalue=1e-16,
Organism=Drosophila melanogaster, GI24644339, Length=192, Percent_Identity=32.8125, Blast_Score=80, Evalue=9e-16,
Organism=Drosophila melanogaster, GI23397609, Length=190, Percent_Identity=32.6315789473684, Blast_Score=77, Evalue=7e-15,
Organism=Drosophila melanogaster, GI17737361, Length=203, Percent_Identity=27.5862068965517, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI24640492, Length=216, Percent_Identity=28.2407407407407, Blast_Score=74, Evalue=8e-14,
Organism=Drosophila melanogaster, GI24639444, Length=230, Percent_Identity=26.5217391304348, Blast_Score=71, Evalue=6e-13,
Organism=Drosophila melanogaster, GI24580925, Length=201, Percent_Identity=27.363184079602, Blast_Score=71, Evalue=7e-13,
Organism=Drosophila melanogaster, GI21355319, Length=197, Percent_Identity=26.3959390862944, Blast_Score=70, Evalue=9e-13,
Organism=Drosophila melanogaster, GI24581726, Length=212, Percent_Identity=26.4150943396226, Blast_Score=65, Evalue=4e-11,

Paralogues:

None

Copy number: 1300 Molecules/Cell In: Growth-Phase, Minimal-Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 25237; Mature: 25106

Theoretical pI: Translated: 5.70; Mature: 5.70

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTSDNGKVLLITGASTGIGRSTAIQAVEAGWRVVVAARSAEKLTALVDELGAERAIAVP
CCCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEECC
CDVAEWEQQEAMVQKTIERFGRLDAVFANAGFSNGSSFIEGEHRPNEWRDMVMTNVFGAA
CCHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ATARLTLPELVKTGGHFLVTGSVLGRVTSMRNLYGATKWAVTGMAQAIRNEVASKGVRVT
HHHHCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LVEPGIVDTPFWDGLQKPVAPELLPDDVARGVMYALSQPPHVDVSEIIIRPTGQAH
EECCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCCCC
>Mature Secondary Structure 
STSDNGKVLLITGASTGIGRSTAIQAVEAGWRVVVAARSAEKLTALVDELGAERAIAVP
CCCCCCCEEEEECCCCCCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHCCCCEEECC
CDVAEWEQQEAMVQKTIERFGRLDAVFANAGFSNGSSFIEGEHRPNEWRDMVMTNVFGAA
CCHHHHHHHHHHHHHHHHHHCCHHHHEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
ATARLTLPELVKTGGHFLVTGSVLGRVTSMRNLYGATKWAVTGMAQAIRNEVASKGVRVT
HHHHCCHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE
LVEPGIVDTPFWDGLQKPVAPELLPDDVARGVMYALSQPPHVDVSEIIIRPTGQAH
EECCCCCCCCCHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCHHHEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11418146 [H]