Click here to switch to the map view.

The map label for this gene is aam1 [H]

Identifier: 193212886

GI number: 193212886

Start: 1348691

End: 1350613

Strand: Direct

Name: aam1 [H]

Synonym: Cpar_1234

Alternate gene names: 193212886

Gene position: 1348691-1350613 (Clockwise)

Preceding gene: 193212879

Following gene: 193212887

Centisome position: 58.91

GC content: 60.11

Gene sequence:

>1923_bases
TTGACAATACCATCCCTCGACCTGCTTCTCGCATCACTGGCAACAGCTGACCGCAGCAGCTATTCGCACCGATATGCCGT
GCCGAACCTCTGGCACAACGGCACAACCGGCGTGTCAATGGTCGATCCGGTTGACTACTACGGCGACACGCTCAACGCCA
TCCGAAATGCGCCGCCTTGCGCCCTGAACACCGGGCCGGACGATGCCGACTGGAGCGCTTCGGCAACGGTGTACAACCTT
TTCGTCAGGTACGATGCCGCGTTCGATCACAACCTGGACGGGCACATCGGCACGGATGCGCTGCCGGAGGGATTCCGCGA
AACCGGCACGCTGCTCAAGGCAATCGCGATGCTGCCGTATATCCAGCGAATGGGCGTCAACACGCTCTACCTCCTGCCGC
TGACCAGCATCGGGGCAGTCAACCGAAAGGGTTCGCTCGGCTCGCCGTATGCGATCAAAAACCAGTACAAGCTCGACGAA
ACCCTCGGTGAACCGGTGCTCGACCTGTCGCTTGAAACGCAGCTCAGAGCGCTCGTCGAAGCGTCACACCACCTCGGCAT
GAGGGTCGTCTTCGAGTTCGTTTTCCGCACGGCATCAATCGACAGCGACTGGATCGAAAAACATCCCGAGTGGTTCTACT
GGATCAAATCCGGCGAGAGCCTGCCGCCCTACAGTGCTCCGGCATTCGAGGACGACAAGCTGACGCGCATCTACGAGCAG
GTGGACAAGCACGACTTCCACGAGCTTCCTGAACCGGATGAGACGTACCGCAACCGCTTCGTCCCGGCTCCGGAGAAGCT
CACACTCGGTGCGAACGGCTACACCGGCACGACCGATGACGGCGGTGAATGCGTCATCGCGAGCGCCTTCTCGGACTGGC
CGCCGGACGACCGCCAGCCACCGTGGACCGACGTCACCTATTTGAAGTTGCACGATTCGCCGCGTTTTAACTACATTGCC
TACAACACGATACGGATGTACGACGAGGCGCTCGAACAGCCCGAGTTCCGCGCCATGAAGCTCTGGCGGGAGATTACGGG
CATCATTCCGCACTACCGCAAAGAGTTCGGCATCGACGGCGCGATGATCGATATGGGCCATGCCCTGCCGCCGGAACTGA
AGGCATCCATCGTGGCTGAAGCTCGCAAAGGTGCGCCAGAGTTTGCCTTCTGGGATGAAAACTTCGACCCGTCGCCGAAG
CTGAAGGAGGAGGGGTTCAACGCCGTCTTCGGCTCGTTGCCCTTCGTGATTCACGATGTGCTCTTCATCAAGGGGCTGCT
CAACTTCCTGAACCGCAACGGCGTAGCGATCCCGTTTTTCGCCACGGGCGAGAACCACAACACGCCGAGAGTCTGCCATA
ACCTCGCGGGCAAAGAGGCCGGGCGCCGCCGCTCGCTCTTCCTCTTCACGCTTGGCGCAGTGCTTCCGGCCATGCCGTTC
ATCCACTCCGGCATGGAAATTTGCGAGTGGCATCCTGTTAACCTCGGCCTGAACTTCACCGACGACGACCGCCAGCGCTT
CCCCGCCGAGACGCTGCCGCTCTTCGCGCCCGCTGCCTGCGACTGGGCGAAAACGAATGGCCTCGACCCGCTCTGCGACG
ACATCCGCAAGGTGCTCGACATCCGGCAGCAGTACTTCGATCTCATCCGCTGCGGCGACAAAGGCTCGATCACGCAGCCC
TACATCTCCGATCTGCAGTTGTTGACCGTCATGCGCAAATCGGGTGGCAAAAACCTTGTCTTCGTCGGTAACAGCAACTT
CGAAGAGCCGGTCACCGGCACAATGGAGTTCGGTCAGCAAGAGATGGAGTTCGAAGAGCTGATCACCGGGCGAACGCTGA
CGGTTTCCGATCACAAGCTCGTGATCGATTTCGCTCCCGGTCAGTGTGTGCTGTTCGAACTACCCGGCACGGATGAAGAG
TAA

Upstream 100 bases:

>100_bases
TTCACTCTCTACCGTCAATCGTTCCGCTATTCTTTTCCCGATAATAATTATCTTTAGCCATAATTTTCGCCTCATCGATC
CTGAAAAACCGGCTAACAGC

Downstream 100 bases:

>100_bases
TTCCGAAAAAATTTTTCCAGTAAACCATTTAACTATCATCACATCATGTCACTTCTCGTCATTGGATCCCTCGCTTTCGA
CGACATCGAAACTCCTTTTG

Product: alpha amylase catalytic subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 640; Mature: 639

Protein sequence:

>640_residues
MTIPSLDLLLASLATADRSSYSHRYAVPNLWHNGTTGVSMVDPVDYYGDTLNAIRNAPPCALNTGPDDADWSASATVYNL
FVRYDAAFDHNLDGHIGTDALPEGFRETGTLLKAIAMLPYIQRMGVNTLYLLPLTSIGAVNRKGSLGSPYAIKNQYKLDE
TLGEPVLDLSLETQLRALVEASHHLGMRVVFEFVFRTASIDSDWIEKHPEWFYWIKSGESLPPYSAPAFEDDKLTRIYEQ
VDKHDFHELPEPDETYRNRFVPAPEKLTLGANGYTGTTDDGGECVIASAFSDWPPDDRQPPWTDVTYLKLHDSPRFNYIA
YNTIRMYDEALEQPEFRAMKLWREITGIIPHYRKEFGIDGAMIDMGHALPPELKASIVAEARKGAPEFAFWDENFDPSPK
LKEEGFNAVFGSLPFVIHDVLFIKGLLNFLNRNGVAIPFFATGENHNTPRVCHNLAGKEAGRRRSLFLFTLGAVLPAMPF
IHSGMEICEWHPVNLGLNFTDDDRQRFPAETLPLFAPAACDWAKTNGLDPLCDDIRKVLDIRQQYFDLIRCGDKGSITQP
YISDLQLLTVMRKSGGKNLVFVGNSNFEEPVTGTMEFGQQEMEFEELITGRTLTVSDHKLVIDFAPGQCVLFELPGTDEE

Sequences:

>Translated_640_residues
MTIPSLDLLLASLATADRSSYSHRYAVPNLWHNGTTGVSMVDPVDYYGDTLNAIRNAPPCALNTGPDDADWSASATVYNL
FVRYDAAFDHNLDGHIGTDALPEGFRETGTLLKAIAMLPYIQRMGVNTLYLLPLTSIGAVNRKGSLGSPYAIKNQYKLDE
TLGEPVLDLSLETQLRALVEASHHLGMRVVFEFVFRTASIDSDWIEKHPEWFYWIKSGESLPPYSAPAFEDDKLTRIYEQ
VDKHDFHELPEPDETYRNRFVPAPEKLTLGANGYTGTTDDGGECVIASAFSDWPPDDRQPPWTDVTYLKLHDSPRFNYIA
YNTIRMYDEALEQPEFRAMKLWREITGIIPHYRKEFGIDGAMIDMGHALPPELKASIVAEARKGAPEFAFWDENFDPSPK
LKEEGFNAVFGSLPFVIHDVLFIKGLLNFLNRNGVAIPFFATGENHNTPRVCHNLAGKEAGRRRSLFLFTLGAVLPAMPF
IHSGMEICEWHPVNLGLNFTDDDRQRFPAETLPLFAPAACDWAKTNGLDPLCDDIRKVLDIRQQYFDLIRCGDKGSITQP
YISDLQLLTVMRKSGGKNLVFVGNSNFEEPVTGTMEFGQQEMEFEELITGRTLTVSDHKLVIDFAPGQCVLFELPGTDEE
>Mature_639_residues
TIPSLDLLLASLATADRSSYSHRYAVPNLWHNGTTGVSMVDPVDYYGDTLNAIRNAPPCALNTGPDDADWSASATVYNLF
VRYDAAFDHNLDGHIGTDALPEGFRETGTLLKAIAMLPYIQRMGVNTLYLLPLTSIGAVNRKGSLGSPYAIKNQYKLDET
LGEPVLDLSLETQLRALVEASHHLGMRVVFEFVFRTASIDSDWIEKHPEWFYWIKSGESLPPYSAPAFEDDKLTRIYEQV
DKHDFHELPEPDETYRNRFVPAPEKLTLGANGYTGTTDDGGECVIASAFSDWPPDDRQPPWTDVTYLKLHDSPRFNYIAY
NTIRMYDEALEQPEFRAMKLWREITGIIPHYRKEFGIDGAMIDMGHALPPELKASIVAEARKGAPEFAFWDENFDPSPKL
KEEGFNAVFGSLPFVIHDVLFIKGLLNFLNRNGVAIPFFATGENHNTPRVCHNLAGKEAGRRRSLFLFTLGAVLPAMPFI
HSGMEICEWHPVNLGLNFTDDDRQRFPAETLPLFAPAACDWAKTNGLDPLCDDIRKVLDIRQQYFDLIRCGDKGSITQPY
ISDLQLLTVMRKSGGKNLVFVGNSNFEEPVTGTMEFGQQEMEFEELITGRTLTVSDHKLVIDFAPGQCVLFELPGTDEE

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: NA

Molecular weight: Translated: 71853; Mature: 71722

Theoretical pI: Translated: 4.64; Mature: 4.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTIPSLDLLLASLATADRSSYSHRYAVPNLWHNGTTGVSMVDPVDYYGDTLNAIRNAPPC
CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCC
ALNTGPDDADWSASATVYNLFVRYDAAFDHNLDGHIGTDALPEGFRETGTLLKAIAMLPY
CCCCCCCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IQRMGVNTLYLLPLTSIGAVNRKGSLGSPYAIKNQYKLDETLGEPVLDLSLETQLRALVE
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCEECHHHHHHHHHHH
ASHHLGMRVVFEFVFRTASIDSDWIEKHPEWFYWIKSGESLPPYSAPAFEDDKLTRIYEQ
HHHHCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
VDKHDFHELPEPDETYRNRFVPAPEKLTLGANGYTGTTDDGGECVIASAFSDWPPDDRQP
HHHHHHHCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PWTDVTYLKLHDSPRFNYIAYNTIRMYDEALEQPEFRAMKLWREITGIIPHYRKEFGIDG
CCCCEEEEEEECCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
AMIDMGHALPPELKASIVAEARKGAPEFAFWDENFDPSPKLKEEGFNAVFGSLPFVIHDV
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHH
LFIKGLLNFLNRNGVAIPFFATGENHNTPRVCHNLAGKEAGRRRSLFLFTLGAVLPAMPF
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
IHSGMEICEWHPVNLGLNFTDDDRQRFPAETLPLFAPAACDWAKTNGLDPLCDDIRKVLD
HHCCCHHHEEEECEECCCCCCCHHHHCCHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHH
IRQQYFDLIRCGDKGSITQPYISDLQLLTVMRKSGGKNLVFVGNSNFEEPVTGTMEFGQQ
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCHH
EMEFEELITGRTLTVSDHKLVIDFAPGQCVLFELPGTDEE
HHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCC
>Mature Secondary Structure 
TIPSLDLLLASLATADRSSYSHRYAVPNLWHNGTTGVSMVDPVDYYGDTLNAIRNAPPC
CCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHHHCCCCCC
ALNTGPDDADWSASATVYNLFVRYDAAFDHNLDGHIGTDALPEGFRETGTLLKAIAMLPY
CCCCCCCCCCCCCCHHEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
IQRMGVNTLYLLPLTSIGAVNRKGSLGSPYAIKNQYKLDETLGEPVLDLSLETQLRALVE
HHHCCCCEEEEEECCCCCCCCCCCCCCCCCEECCCCCCHHHHCCCCEECHHHHHHHHHHH
ASHHLGMRVVFEFVFRTASIDSDWIEKHPEWFYWIKSGESLPPYSAPAFEDDKLTRIYEQ
HHHHCHHHHHHHHHHHHCCCCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHH
VDKHDFHELPEPDETYRNRFVPAPEKLTLGANGYTGTTDDGGECVIASAFSDWPPDDRQP
HHHHHHHCCCCCCHHHHHCCCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCCCCCCCC
PWTDVTYLKLHDSPRFNYIAYNTIRMYDEALEQPEFRAMKLWREITGIIPHYRKEFGIDG
CCCCEEEEEEECCCCCCEEEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCC
AMIDMGHALPPELKASIVAEARKGAPEFAFWDENFDPSPKLKEEGFNAVFGSLPFVIHDV
EEEECCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCHHHCCCHHHHHHHHHHHHHH
LFIKGLLNFLNRNGVAIPFFATGENHNTPRVCHNLAGKEAGRRRSLFLFTLGAVLPAMPF
HHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHH
IHSGMEICEWHPVNLGLNFTDDDRQRFPAETLPLFAPAACDWAKTNGLDPLCDDIRKVLD
HHCCCHHHEEEECEECCCCCCCHHHHCCHHHCCCCCCCCCCCHHCCCCCHHHHHHHHHHH
IRQQYFDLIRCGDKGSITQPYISDLQLLTVMRKSGGKNLVFVGNSNFEEPVTGTMEFGQQ
HHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHCHH
EMEFEELITGRTLTVSDHKLVIDFAPGQCVLFELPGTDEE
HHHHHHHHCCCEEEECCCEEEEEECCCCEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10970853 [H]