Definition | Rhodopseudomonas palustris TIE-1 chromosome, complete genome. |
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Accession | NC_011004 |
Length | 5,744,041 |
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The map label for this gene is 192289070
Identifier: 192289070
GI number: 192289070
Start: 693685
End: 694212
Strand: Reverse
Name: 192289070
Synonym: Rpal_0640
Alternate gene names: NA
Gene position: 694212-693685 (Counterclockwise)
Preceding gene: 192289071
Following gene: 192289068
Centisome position: 12.09
GC content: 67.05
Gene sequence:
>528_bases ATGGCTTTTTGGCACCGCACAGCCGTTCTTGCGATCCTCGGCCTGCTGGCGGCGGGCGGCTCCGCCGACGCCCAGCAATG GAGCGCAGAAGCCATGAAGGGAGTCGATGAGGTGCTTCAGGGGCGCGCACGATCGCTCCCGGAAGCCAAGGAAGACGTCT CGGCCACCCGCGCAACAGCTTCGCCGCAGTTCGATTTCAAGGCTGCGGTCGCTGAGATCCGGGCCGCGGAACGGGTGGTT ATCGCAGCCCTTCAAACCGGCGACTCTAGCGAGCTGAGGTCGATCGAGAGCAAGCTGATCCGGCTTGAAACGCGCATTCT GGAGGCCAAGCCGGGTGATAACCGCGCCTCTTGCGGCTTGGCGGCGGGTGATCTCGCTGCGGTCGGCTCCTCAATGCGGA GAGTAGCCGAGCGAGACGAGCCGGCCCGGCATCTGGTGGCAGCCGAGACGATCGAAGCGGCGTATCGGCGACATCTCGCC GAATGCGAGCGCGCGCTCCGCGCCTCCGACCGCCGCGCGCGGCGGTGA
Upstream 100 bases:
>100_bases CGACCTCTACCCGGACGAAGAGGAAGTGCCTATGATCGAGCCTGTCCGCATCATCGGCCGCGTCAAATGGGTCGGCCGGA GCTTGTAAGAGGGCGTCGAC
Downstream 100 bases:
>100_bases GCTGCTTCGGTGTCAGGGCGGCGTCAGAGTTCCGCGGCGGCGCCCGCGCGGCAGATCGTGCATAAAGCCGCTAAAATCAG TCGTTTACGGCCCTTTCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 175; Mature: 174
Protein sequence:
>175_residues MAFWHRTAVLAILGLLAAGGSADAQQWSAEAMKGVDEVLQGRARSLPEAKEDVSATRATASPQFDFKAAVAEIRAAERVV IAALQTGDSSELRSIESKLIRLETRILEAKPGDNRASCGLAAGDLAAVGSSMRRVAERDEPARHLVAAETIEAAYRRHLA ECERALRASDRRARR
Sequences:
>Translated_175_residues MAFWHRTAVLAILGLLAAGGSADAQQWSAEAMKGVDEVLQGRARSLPEAKEDVSATRATASPQFDFKAAVAEIRAAERVV IAALQTGDSSELRSIESKLIRLETRILEAKPGDNRASCGLAAGDLAAVGSSMRRVAERDEPARHLVAAETIEAAYRRHLA ECERALRASDRRARR >Mature_174_residues AFWHRTAVLAILGLLAAGGSADAQQWSAEAMKGVDEVLQGRARSLPEAKEDVSATRATASPQFDFKAAVAEIRAAERVVI AALQTGDSSELRSIESKLIRLETRILEAKPGDNRASCGLAAGDLAAVGSSMRRVAERDEPARHLVAAETIEAAYRRHLAE CERALRASDRRARR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18862; Mature: 18730
Theoretical pI: Translated: 8.78; Mature: 8.78
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAFWHRTAVLAILGLLAAGGSADAQQWSAEAMKGVDEVLQGRARSLPEAKEDVSATRATA CCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC SPQFDFKAAVAEIRAAERVVIAALQTGDSSELRSIESKLIRLETRILEAKPGDNRASCGL CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC AAGDLAAVGSSMRRVAERDEPARHLVAAETIEAAYRRHLAECERALRASDRRARR CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure AFWHRTAVLAILGLLAAGGSADAQQWSAEAMKGVDEVLQGRARSLPEAKEDVSATRATA CHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCC SPQFDFKAAVAEIRAAERVVIAALQTGDSSELRSIESKLIRLETRILEAKPGDNRASCGL CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC AAGDLAAVGSSMRRVAERDEPARHLVAAETIEAAYRRHLAECERALRASDRRARR CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA