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The map label for this gene is nudC [H]

Identifier: 192289047

GI number: 192289047

Start: 671420

End: 672352

Strand: Reverse

Name: nudC [H]

Synonym: Rpal_0617

Alternate gene names: 192289047

Gene position: 672352-671420 (Counterclockwise)

Preceding gene: 192289048

Following gene: 192289046

Centisome position: 11.71

GC content: 67.52

Gene sequence:

>933_bases
ATGAGCACGCCTTTCCCGCTCGGCCAGCCAGCCTTCGTCACCCACGTGCTCGACCGCGCTGCGCATCTGCGCGGCAACGA
CGCCAAGCTGATGGCGATGGAGGAGCGCGGCGACACCCGCGCCTACGTCGTGCACCGCGATTCGCTGTTGGTGAAGCACG
AGGCCGGCGGCCCGCGGGCCGAGCTGACGATCAAGGAGGCGCTGGCGCTCGGCGCCAACCCTGGCACGATTTTCCTCGGT
CTGCGAAACGGCGCTGCCGTGTTCGGCATGGGGATCGGCGCCCCTGCAGCCGATAAGCTCGCCGGCCGGACCGATGCCGG
TCTCGCCGAGCTGCGCGGCCTTGCGATGCAGGGCGTGCTGCCGGTCGAACAGCTCTCGGCGATCGCGATGGCGAAGTCGC
TGGTGAACTGGCATCAGCGCCACGGCTATTGCGCCAATTGCGGCACCCGCACCGCGATGGCGCAAGGCGGCTGGAAGCGC
GACTGCCCGTCCTGCAAGGCCGAGCACTTCCCGCGCACCGATCCGGTGGTGATCATGCTGGTGACGCGCGGCGACCAATG
CCTGCTCGGCCGGCAGAAGCAGTTTCCGGCCGGGATGTATTCGTGCCTCGCCGGCTTCGTCGAAGCAGCCGAGACGATCG
AGGACGCGGTCCGCCGCGAGATCGTCGAGGAGTCCGGCATTCTGTGCACCGACGTGCGTTACTACATGACGCAGCCATGG
CCGTATCCGTCGTCGCTGATGATCGCCTGCACGGCGACCGCCACGAGCGACGACATCACCGTCGATCTTACTGAACTTGA
AGACGCGCGGTGGTTTTCCCGTGACGAGGCGGCGCAGATGCTGAAGCGCGAGCATCCGGACGGACTGCTCGGGCCGCACC
CGTTCGCCATCGCGCACCATCTTCTCGGCCGCTGGCTGGAGGGACAATCATGA

Upstream 100 bases:

>100_bases
CGGCCGGTGTGGGGCGTGATGCCGCCGCTGGCGCACGATCCCGAAGAGGTGCAGCAGTTCATCAACCTGCTCCGCCGCAA
GATCTGGTTGAGCTGAGCCG

Downstream 100 bases:

>100_bases
GCGACACTGCCAAACGCCAGCCGCGGGTGTTGTGCATCGGAATTCCGGTGCGCGACCTCACTTTCCGGATCGAGGCGGTG
CCCGGCCGCGGCAACAAGGT

Product: NUDIX hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MSTPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLLVKHEAGGPRAELTIKEALALGANPGTIFLG
LRNGAAVFGMGIGAPAADKLAGRTDAGLAELRGLAMQGVLPVEQLSAIAMAKSLVNWHQRHGYCANCGTRTAMAQGGWKR
DCPSCKAEHFPRTDPVVIMLVTRGDQCLLGRQKQFPAGMYSCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPW
PYPSSLMIACTATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAIAHHLLGRWLEGQS

Sequences:

>Translated_310_residues
MSTPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLLVKHEAGGPRAELTIKEALALGANPGTIFLG
LRNGAAVFGMGIGAPAADKLAGRTDAGLAELRGLAMQGVLPVEQLSAIAMAKSLVNWHQRHGYCANCGTRTAMAQGGWKR
DCPSCKAEHFPRTDPVVIMLVTRGDQCLLGRQKQFPAGMYSCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPW
PYPSSLMIACTATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAIAHHLLGRWLEGQS
>Mature_309_residues
STPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLLVKHEAGGPRAELTIKEALALGANPGTIFLGL
RNGAAVFGMGIGAPAADKLAGRTDAGLAELRGLAMQGVLPVEQLSAIAMAKSLVNWHQRHGYCANCGTRTAMAQGGWKRD
CPSCKAEHFPRTDPVVIMLVTRGDQCLLGRQKQFPAGMYSCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPWP
YPSSLMIACTATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAIAHHLLGRWLEGQS

Specific function: Unknown

COG id: COG2816

COG function: function code L; NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

Organism=Homo sapiens, GI13899267, Length=336, Percent_Identity=38.3928571428571, Blast_Score=206, Evalue=2e-53,
Organism=Homo sapiens, GI50593112, Length=215, Percent_Identity=42.7906976744186, Blast_Score=168, Evalue=6e-42,
Organism=Escherichia coli, GI48994995, Length=172, Percent_Identity=36.046511627907, Blast_Score=125, Evalue=5e-30,
Organism=Caenorhabditis elegans, GI71986510, Length=216, Percent_Identity=32.4074074074074, Blast_Score=106, Evalue=1e-23,
Organism=Caenorhabditis elegans, GI212645999, Length=216, Percent_Identity=32.4074074074074, Blast_Score=106, Evalue=2e-23,
Organism=Saccharomyces cerevisiae, GI6321371, Length=183, Percent_Identity=36.0655737704918, Blast_Score=111, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015375
- InterPro:   IPR022925
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797
- InterPro:   IPR015376 [H]

Pfam domain/function: PF00293 NUDIX; PF09296 NUDIX-like; PF09297 zf-NADH-PPase [H]

EC number: =3.6.1.22 [H]

Molecular weight: Translated: 33705; Mature: 33574

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLLVKHEAGGPRA
CCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCE
ELTIKEALALGANPGTIFLGLRNGAAVFGMGIGAPAADKLAGRTDAGLAELRGLAMQGVL
EEEHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHCCC
PVEQLSAIAMAKSLVNWHQRHGYCANCGTRTAMAQGGWKRDCPSCKAEHFPRTDPVVIML
CHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEE
VTRGDQCLLGRQKQFPAGMYSCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPW
EECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCC
PYPSSLMIACTATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAIAHH
CCCCCEEEEEEECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
LLGRWLEGQS
HHHHHHCCCC
>Mature Secondary Structure 
STPFPLGQPAFVTHVLDRAAHLRGNDAKLMAMEERGDTRAYVVHRDSLLVKHEAGGPRA
CCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCEEEEECCCCCCE
ELTIKEALALGANPGTIFLGLRNGAAVFGMGIGAPAADKLAGRTDAGLAELRGLAMQGVL
EEEHHHHHHHCCCCCEEEEEECCCCEEEEECCCCCCHHHHCCCCCCCHHHHHHHHHHCCC
PVEQLSAIAMAKSLVNWHQRHGYCANCGTRTAMAQGGWKRDCPSCKAEHFPRTDPVVIML
CHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHCCCCCCCCCCCCHHCCCCCCCEEEEE
VTRGDQCLLGRQKQFPAGMYSCLAGFVEAAETIEDAVRREIVEESGILCTDVRYYMTQPW
EECCCCEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHCCCC
PYPSSLMIACTATATSDDITVDLTELEDARWFSRDEAAQMLKREHPDGLLGPHPFAIAHH
CCCCCEEEEEEECCCCCCEEEEEECCCCHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHH
LLGRWLEGQS
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]