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The map label for this gene is chrR [H]

Identifier: 192288980

GI number: 192288980

Start: 600745

End: 601407

Strand: Reverse

Name: chrR [H]

Synonym: Rpal_0550

Alternate gene names: 192288980

Gene position: 601407-600745 (Counterclockwise)

Preceding gene: 192288981

Following gene: 192288978

Centisome position: 10.47

GC content: 71.19

Gene sequence:

>663_bases
ATGACGGTGCGGCACCATATCGGCGATGATCTGCTGCTGAGCTACGCGGCCGGCACGCTGGACGAGGCCTCGAGCCTGCT
GGTCGCCACCCATCTGGCGCTGTGCCCGCATTGCCGCGCCCGCGCCGCAGCCGCCGATGCGCTCGGCGGCGAAATGCTCG
ACGCGCTGCCTGCAGCGGCGGTGACGCCGCAGCTGTGGCAGAACGTGCTGGCGCGGACGCAAGACCAGCCGGAGACACCG
CCGGCCATCCCTGCAACGGCGCTGCGGCCGCGTTCCGATATCGTGATCCCGGAGCCGCTGCGCAGCTATCTGGGCACCGA
CCTCGCCGGCCTGCGCTGGACACGGCTGGCGCCGCGGGTGCAGCAGATCACCATCGACATTCCGGGCTGCCGTCCTCGCG
CGCGGATGCTGCGGTTCGAGGCCGGCACGCGTGTTCTTGAACACGGGCATTCCGGGCGCGAGCTGACGCTGGTGTTGCAC
GGATCACTGTGTGACGGCGCTGCGGTGATGCGGCGCGGTGACGTCGCCGAGACGGACGAGGGCACCGAGCACCAGCCGCA
GGCCGGCCCCGACGGCGACTGCATCTGCCTCGCCGTCACCGACGCGCCGCTGCGGTTCAAGAGCCGGTTCGCCCGGCTGC
TGCAGCCCTGGTTCGGTATCTAG

Upstream 100 bases:

>100_bases
CCGAGCAGCTCGGCCTGCCGGTCGGCACGGTGAAATCACGGATCCGGCTCGCCTTCGGCAAACTGCGCGCCGCGCTCGAC
ACCACCGCCGGAGAGCCGCG

Downstream 100 bases:

>100_bases
GCGACAGGCGTCGTCCCGCTATCGCTGCGGACCGGCACGGGTCCGCTGGGCTCGGAGGGCGCGACCGCGGCCGGCCCGGT
GCCGGCGCCGATCCGGGGCG

Product: anti-ECFsigma factor ChrR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 219

Protein sequence:

>220_residues
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGGEMLDALPAAAVTPQLWQNVLARTQDQPETP
PAIPATALRPRSDIVIPEPLRSYLGTDLAGLRWTRLAPRVQQITIDIPGCRPRARMLRFEAGTRVLEHGHSGRELTLVLH
GSLCDGAAVMRRGDVAETDEGTEHQPQAGPDGDCICLAVTDAPLRFKSRFARLLQPWFGI

Sequences:

>Translated_220_residues
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGGEMLDALPAAAVTPQLWQNVLARTQDQPETP
PAIPATALRPRSDIVIPEPLRSYLGTDLAGLRWTRLAPRVQQITIDIPGCRPRARMLRFEAGTRVLEHGHSGRELTLVLH
GSLCDGAAVMRRGDVAETDEGTEHQPQAGPDGDCICLAVTDAPLRFKSRFARLLQPWFGI
>Mature_219_residues
TVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGGEMLDALPAAAVTPQLWQNVLARTQDQPETPP
AIPATALRPRSDIVIPEPLRSYLGTDLAGLRWTRLAPRVQQITIDIPGCRPRARMLRFEAGTRVLEHGHSGRELTLVLHG
SLCDGAAVMRRGDVAETDEGTEHQPQAGPDGDCICLAVTDAPLRFKSRFARLLQPWFGI

Specific function: Anti-sigma factor that inhibits the activity of the extracytoplasmic function (ECF) sigma (E) factor, thereby indirectly regulating the transcription of the cycA and rpoE genes [H]

COG id: COG3806

COG function: function code T; Anti-sigma factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012807
- InterPro:   IPR011051
- InterPro:   IPR014710 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 23783; Mature: 23651

Theoretical pI: Translated: 6.71; Mature: 6.71

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGGEMLDALPAAA
CCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VTPQLWQNVLARTQDQPETPPAIPATALRPRSDIVIPEPLRSYLGTDLAGLRWTRLAPRV
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCE
QQITIDIPGCRPRARMLRFEAGTRVLEHGHSGRELTLVLHGSLCDGAAVMRRGDVAETDE
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCC
GTEHQPQAGPDGDCICLAVTDAPLRFKSRFARLLQPWFGI
CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TVRHHIGDDLLLSYAAGTLDEASSLLVATHLALCPHCRARAAAADALGGEMLDALPAAA
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
VTPQLWQNVLARTQDQPETPPAIPATALRPRSDIVIPEPLRSYLGTDLAGLRWTRLAPRV
CCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHCCCE
QQITIDIPGCRPRARMLRFEAGTRVLEHGHSGRELTLVLHGSLCDGAAVMRRGDVAETDE
EEEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHHCCCCCCCCC
GTEHQPQAGPDGDCICLAVTDAPLRFKSRFARLLQPWFGI
CCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7721683 [H]