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The map label for this gene is radC [C]

Identifier: 192288820

GI number: 192288820

Start: 415092

End: 415811

Strand: Reverse

Name: radC [C]

Synonym: Rpal_0389

Alternate gene names: 192288820

Gene position: 415811-415092 (Counterclockwise)

Preceding gene: 192288821

Following gene: 192288813

Centisome position: 7.24

GC content: 64.03

Gene sequence:

>720_bases
ATGCCGACAGACAACGCCGAGCGACTGCAGCAGCCAGGATTTGCCGAAGCGCCGCATTATCATGGCCATCGCGAGCGGCT
GCGGGAGCGGTTTCGCGAGGCCGGTTCCGACGCGCTATCCGACTACGAACTGCTCGAACTGGTGCTGTTCCGGGCGCTGC
CGCGCCGGGACGTCAAACCGATCGCGAAGGAGCTGATCGCCCGGTTCGGTTCGTTCGCCGAGGCGGTGCATGCGCCGGCC
GAACGGCTGCGCGAAGTCAGCGGGGTCGGCGAAGCCGCCATCATCGAGATCGGACTGATCGCGGCTGCGGCTGCGCGGGT
GACCAAGGGGCAGGTGAAGCAGCGCACCGTGCTGTCGTCCTGGTCGGCGGTGATCGACTATTGCCGCACCACCATGGCGT
TCGCCGACAAGGAGCAGTTCCGAATCCTGTTTCTCGACAAGCGCAACCAGCTCATCGCCGACGAACTGCAGCAGGTCGGC
ACCGTCGACCACACGCCGGTATATCCGCGCGAGATCGTCAAACGCGGATTGGAATTGTCGGCGACCGCTGTGATCATGGT
TCACAATCACCCCTCGGGCGATCCGACGCCGTCACAGGCCGATATTCAGATGACGAAATCGATCGTGGCGATCGCCGAGC
CTCTCGGCATCGCGGTGCACGACCACATCATCGTCGGCAAGAACGGCCACGCCAGTCTCAAGGGCCTGAGGCTGATTTGA

Upstream 100 bases:

>100_bases
GACTGATTCTGTTAAGCGCCCGAAAGAAGGGCCGGATTCGGGTTGCAAATGCCGCCCGGCACGGCATGGTTGTGGCAGCA
TCAAATGCGCGGCCGTGGAC

Downstream 100 bases:

>100_bases
GGCTGGCCGCAGCGCTTAGTTCGCGTTCGGCTTGATTTCGGGTTTGGCCGCGCGCACCAGCCGCACGGCGAGGCGGATAC
CCCGGCTGTTGCTGTCCGGA

Product: DNA repair protein RadC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 239; Mature: 238

Protein sequence:

>239_residues
MPTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKPIAKELIARFGSFAEAVHAPA
ERLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSSWSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVG
TVDHTPVYPREIVKRGLELSATAVIMVHNHPSGDPTPSQADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI

Sequences:

>Translated_239_residues
MPTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKPIAKELIARFGSFAEAVHAPA
ERLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSSWSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVG
TVDHTPVYPREIVKRGLELSATAVIMVHNHPSGDPTPSQADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI
>Mature_238_residues
PTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKPIAKELIARFGSFAEAVHAPAE
RLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSSWSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVGT
VDHTPVYPREIVKRGLELSATAVIMVHNHPSGDPTPSQADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=206, Percent_Identity=31.5533980582524, Blast_Score=123, Evalue=1e-29,
Organism=Escherichia coli, GI2367100, Length=109, Percent_Identity=49.5412844036697, Blast_Score=114, Evalue=6e-27,
Organism=Escherichia coli, GI1788997, Length=109, Percent_Identity=46.7889908256881, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1788312, Length=111, Percent_Identity=44.1441441441441, Blast_Score=100, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 26403; Mature: 26271

Theoretical pI: Translated: 7.89; Mature: 7.89

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKP
CCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
IAKELIARFGSFAEAVHAPAERLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVGTVDHTPVYPREIVKRGLELS
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC
ATAVIMVHNHPSGDPTPSQADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECEEEECCCCCCCCCCCCCC
>Mature Secondary Structure 
PTDNAERLQQPGFAEAPHYHGHRERLRERFREAGSDALSDYELLELVLFRALPRRDVKP
CCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHH
IAKELIARFGSFAEAVHAPAERLREVSGVGEAAIIEIGLIAAAAARVTKGQVKQRTVLSS
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
WSAVIDYCRTTMAFADKEQFRILFLDKRNQLIADELQQVGTVDHTPVYPREIVKRGLELS
HHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCC
ATAVIMVHNHPSGDPTPSQADIQMTKSIVAIAEPLGIAVHDHIIVGKNGHASLKGLRLI
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEECEEEECCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA