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The map label for this gene is ydhC [H]

Identifier: 190894975

GI number: 190894975

Start: 694256

End: 694933

Strand: Reverse

Name: ydhC [H]

Synonym: RHECIAT_PC0000641

Alternate gene names: 190894975

Gene position: 694933-694256 (Counterclockwise)

Preceding gene: 190894976

Following gene: 190894973

Centisome position: 63.67

GC content: 59.59

Gene sequence:

>678_bases
ATGCCTTTCAACACCGCTCAGGTGACCAATCTCGGAAAGGCGCCCACGGCCTCGGATGTGATCTTGAAATTCATCCGGGA
TTCGATCGCGGACGGCTCGCTTGATGAAGGCGAGCCGATTCGTCAAGACGATGTGGCGCGGCTGTTCAATGTCAGCAAGA
TCCCCGTCCGGGAGGCGCTGAAACGTCTGGAGGCCGAAGGCCTGGTGGAATTCCACCGGAACAAGGGCGCGATCGTCACC
AGCGTCTCGGAGCCGGAGATCGCCCAGATCTTCGAGGTGCGGGCGATTCTCGAATCGAATGCCATCAAGCTCTCGATCCC
GCACATGACCGAAAAGACCTTTGAGACGGCTCTGGCCTATTGTGACGCCTTCGCCAAGGAAACGGATGTGGCGCGCTGGT
CGGAATTGAACTGGCGCTTCCACAGCTGTCTTTACGAGGACGCTGAGCGGCCGTTCCTCGTCAGCACGATCCGTTCGGTA
AACGACCGGCTGGAGCGATATCTGCGGGTGCAGCTGACGCTGTCGCATGGCCAGGAGACGGCGGATCGCGAGCATCGGCA
AATCATCGAAGCGTGCCGGGAGCGGGATGAGGAAAAAGCGGCAAGCCTCGTCTATGCTCATATCATGAGCGCCTGCCGAT
CGCTCCTCGAACACCTTCCGGCAAAAAAGCCCCGTTGA

Upstream 100 bases:

>100_bases
GCAGGCGGTGGCTTGAACGCGCCGATCGCCCTTGAGCATCGGGATCGTCTACGATATCCCAATGAGATATGCGTCGGGTA
GGAAACGAGGAGCTCCGGGA

Downstream 100 bases:

>100_bases
GCGTCATCCCATCGATCGCGGGAACAATCAGGCGCCGGCGATCTTCACGACAGCCTCGAAGACGGCGCGCGGCACTTTCA
CGCCTTCCGTCGCCGGCCTT

Product: putative GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 224

Protein sequence:

>225_residues
MPFNTAQVTNLGKAPTASDVILKFIRDSIADGSLDEGEPIRQDDVARLFNVSKIPVREALKRLEAEGLVEFHRNKGAIVT
SVSEPEIAQIFEVRAILESNAIKLSIPHMTEKTFETALAYCDAFAKETDVARWSELNWRFHSCLYEDAERPFLVSTIRSV
NDRLERYLRVQLTLSHGQETADREHRQIIEACRERDEEKAASLVYAHIMSACRSLLEHLPAKKPR

Sequences:

>Translated_225_residues
MPFNTAQVTNLGKAPTASDVILKFIRDSIADGSLDEGEPIRQDDVARLFNVSKIPVREALKRLEAEGLVEFHRNKGAIVT
SVSEPEIAQIFEVRAILESNAIKLSIPHMTEKTFETALAYCDAFAKETDVARWSELNWRFHSCLYEDAERPFLVSTIRSV
NDRLERYLRVQLTLSHGQETADREHRQIIEACRERDEEKAASLVYAHIMSACRSLLEHLPAKKPR
>Mature_224_residues
PFNTAQVTNLGKAPTASDVILKFIRDSIADGSLDEGEPIRQDDVARLFNVSKIPVREALKRLEAEGLVEFHRNKGAIVTS
VSEPEIAQIFEVRAILESNAIKLSIPHMTEKTFETALAYCDAFAKETDVARWSELNWRFHSCLYEDAERPFLVSTIRSVN
DRLERYLRVQLTLSHGQETADREHRQIIEACRERDEEKAASLVYAHIMSACRSLLEHLPAKKPR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082149, Length=201, Percent_Identity=25.3731343283582, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25604; Mature: 25473

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPFNTAQVTNLGKAPTASDVILKFIRDSIADGSLDEGEPIRQDDVARLFNVSKIPVREAL
CCCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
KRLEAEGLVEFHRNKGAIVTSVSEPEIAQIFEVRAILESNAIKLSIPHMTEKTFETALAY
HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
CDAFAKETDVARWSELNWRFHSCLYEDAERPFLVSTIRSVNDRLERYLRVQLTLSHGQET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ADREHRQIIEACRERDEEKAASLVYAHIMSACRSLLEHLPAKKPR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PFNTAQVTNLGKAPTASDVILKFIRDSIADGSLDEGEPIRQDDVARLFNVSKIPVREAL
CCCCHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCHHHHH
KRLEAEGLVEFHRNKGAIVTSVSEPEIAQIFEVRAILESNAIKLSIPHMTEKTFETALAY
HHHHHHHHHHHHCCCCCEEEECCCCHHHHHHHHHHHHHCCCEEEECCCHHHHHHHHHHHH
CDAFAKETDVARWSELNWRFHSCLYEDAERPFLVSTIRSVNDRLERYLRVQLTLSHGQET
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
ADREHRQIIEACRERDEEKAASLVYAHIMSACRSLLEHLPAKKPR
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]