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The map label for this gene is nusA [H]

Identifier: 190571750

GI number: 190571750

Start: 1476012

End: 1477565

Strand: Reverse

Name: nusA [H]

Synonym: WPa_1384

Alternate gene names: 190571750

Gene position: 1477565-1476012 (Counterclockwise)

Preceding gene: 190571751

Following gene: 190571749

Centisome position: 99.67

GC content: 32.05

Gene sequence:

>1554_bases
ATGATTGCTAATCGTAAAAGCAGTGTTAATCAGAAAGGCAACAAGAATAACATAGTTGGAAGCCTTGATGTAATAAAAAC
AGCGGGAGAGCTCTCACTTCAAAAAGGTTTGGATTTTAATATTATAATAAATGCACTTAAAAGTGCTATCGAAGCAGTAG
CTCAACAAAAGTATGGTAGCAAAAGTAAAATTGTAGTTAATATAGATAGAAACACAGGCAAAGTTACCTCATATAGACAA
CTAAAAGTCATTAATGATGAATCAAATGAAAATGAGTGTGACTTAATTAAGTTGACACAAGCTAAGTTAATAAAAGAAGA
TGCAAAAGTTGGAGATACTATTAGTGAATTGATTTCTCTTAACACTGATCTTGTTTCAGCAAGAATTGCCCAGCAAAAGA
TTTCTGAAATAATCAAAAATGAAGAGTTAAAAAAGCAATATGAGGAATTTAAAGATAAGGTAGGAGAAATGAGGTATGGC
ATCGTTAAACAAGTAGAATATTCAGATCTTATTATAGACATAAACGGAATTGGAGCATACCTCCCTTTACGAAACTTAAT
TGGTGGTGAGTCATTTCGTGAAGGCGATAAGGTTAAAGCTTACATACAGGCTGTTAAGCGCTCTGACGATGGACGTCAAA
TCATTCTTTCTAGGACTCATGAAGGCTTTTTAGAAGCATTGTTGAATCAAGAAGTACCAGAAATTGCTGACGGATTGATA
ACAATTAAAGGTATAGCTAGAGACGCTGGTTCAAGATCTAAAATTGCTGTTTTTTCATCTGATAGGAATATCGATCCAGT
AGGTGCTTGCGTTGGAGTTAAAGGAGATAGAATAAAAACTATTATACACGAATTAAACGGTGAAAAAATCGACGTCATAC
ATTACTCATCAGATTTGGGTCAATTTATTATTAAAGCCATTACTCCTGCAGAAGTATCAAAGGTCATTATTGACGAAAAT
GAAAATTGTATAGAGTTAATAGTTGCTGAAGATCAATTGAGTTTAGCTATAGGAAAAAAGGGTCAGAATGTAAGATTAGC
TTCAGAGCTTGTTGGATGGAAAATTGAGATATTAAGCACTCAGCAAGAATCAGAAAGAAGAAATAAAGAATTTAGTCAAT
GTTCAGTTTTATTTGCTGAAGCTTTAAACTTAGAAGAGATTATGGGCCAATTATTGGTAACAGAAGGTTTTTCAAGTGTA
GAAGATATATCTAACACTTCAATTAAGGAACTTGCTTCAATAGAGGGCTTCAATGAAGATATTGCAAATGAACTTCATAA
TAGAGCAAATAATTACCTGAAAGCAGAGAATGATAGAAAAATAGAAGAGCTAAAAAATTTAGGTATGGAAGACGATGTAA
TCAACTTAGCCTTATCAATAGATAATAAAATTGCTCTTAGTAAACATAATATTAAAACTTTAGAGGACATAGCAGATTTA
TCAAATTATGAGTTTTGTAGCATACTCTCTTCCTCAACTAATAATAAAGACAATCTAAAAGATACAGCAGATTTAATAAT
CATAGAAGCACGTAAAAAGCTTGGATTAATATAA

Upstream 100 bases:

>100_bases
TGAAAAAACTTGACTTAAATTAGCAATCATTTAACATTTAAGATAGCGTTCTTTACCTGTTGAAGCTATAATTATAACTA
ATTAAATTGGATTTATTTAT

Downstream 100 bases:

>100_bases
AAACAATATGAATAATGAAGATATCAGTAATAAAAAATTAACCCTACAAGGCTTAAGCAAGCTTAAATTAGACATTAATT
TAAACTCTTTAGATAGTCAA

Product: transcription elongation factor NusA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 517; Mature: 517

Protein sequence:

>517_residues
MIANRKSSVNQKGNKNNIVGSLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQ
LKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISLNTDLVSARIAQQKISEIIKNEELKKQYEEFKDKVGEMRYG
IVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKAYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLI
TIKGIARDAGSRSKIAVFSSDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN
ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAEALNLEEIMGQLLVTEGFSSV
EDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRKIEELKNLGMEDDVINLALSIDNKIALSKHNIKTLEDIADL
SNYEFCSILSSSTNNKDNLKDTADLIIIEARKKLGLI

Sequences:

>Translated_517_residues
MIANRKSSVNQKGNKNNIVGSLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQ
LKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISLNTDLVSARIAQQKISEIIKNEELKKQYEEFKDKVGEMRYG
IVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKAYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLI
TIKGIARDAGSRSKIAVFSSDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN
ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAEALNLEEIMGQLLVTEGFSSV
EDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRKIEELKNLGMEDDVINLALSIDNKIALSKHNIKTLEDIADL
SNYEFCSILSSSTNNKDNLKDTADLIIIEARKKLGLI
>Mature_517_residues
MIANRKSSVNQKGNKNNIVGSLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGSKSKIVVNIDRNTGKVTSYRQ
LKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISLNTDLVSARIAQQKISEIIKNEELKKQYEEFKDKVGEMRYG
IVKQVEYSDLIIDINGIGAYLPLRNLIGGESFREGDKVKAYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLI
TIKGIARDAGSRSKIAVFSSDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLGQFIIKAITPAEVSKVIIDEN
ENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILSTQQESERRNKEFSQCSVLFAEALNLEEIMGQLLVTEGFSSV
EDISNTSIKELASIEGFNEDIANELHNRANNYLKAENDRKIEELKNLGMEDDVINLALSIDNKIALSKHNIKTLEDIADL
SNYEFCSILSSSTNNKDNLKDTADLIIIEARKKLGLI

Specific function: Participates in both the termination and antitermination of transcription. Interacts with RNA polymerase and binds RNA [H]

COG id: COG0195

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S1 motif domain [H]

Homologues:

Organism=Escherichia coli, GI1789560, Length=453, Percent_Identity=33.112582781457, Blast_Score=260, Evalue=1e-70,

Paralogues:

None

Copy number: 340 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 1612 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 1,800 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010995
- InterPro:   IPR004087
- InterPro:   IPR015946
- InterPro:   IPR009019
- InterPro:   IPR004088
- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR003029
- InterPro:   IPR022967
- InterPro:   IPR013735
- InterPro:   IPR010214
- InterPro:   IPR010213 [H]

Pfam domain/function: PF08529 NusA_N; PF00575 S1 [H]

EC number: NA

Molecular weight: Translated: 57304; Mature: 57304

Theoretical pI: Translated: 4.88; Mature: 4.88

Prosite motif: PS50084 KH_TYPE_1 ; PS50126 S1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIANRKSSVNQKGNKNNIVGSLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGS
CCCCCCCCCCCCCCCCCCEECHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
KSKIVVNIDRNTGKVTSYRQLKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISL
CCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHC
NTDLVSARIAQQKISEIIKNEELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAY
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEECCCCHH
LPLRNLIGGESFREGDKVKAYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLI
HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCEE
TIKGIARDAGSRSKIAVFSSDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLG
EEEEHHCCCCCCCEEEEEECCCCCCCHHEEECCCCHHHHHHHHHCCCCEEEEEEECCHHH
QFIIKAITPAEVSKVIIDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILST
HHHHHHCCHHHHHEEEECCCCCEEEEEEECCCEEEEECCCCCCEEHHHHHCCEEEEEECC
QQESERRNKEFSQCSVLFAEALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNED
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCHH
IANELHNRANNYLKAENDRKIEELKNLGMEDDVINLALSIDNKIALSKHNIKTLEDIADL
HHHHHHHHHCCCEECCCCCHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHC
SNYEFCSILSSSTNNKDNLKDTADLIIIEARKKLGLI
CCCHHHHHHHCCCCCCCCCCHHHHEEEEEEHHHCCCC
>Mature Secondary Structure
MIANRKSSVNQKGNKNNIVGSLDVIKTAGELSLQKGLDFNIIINALKSAIEAVAQQKYGS
CCCCCCCCCCCCCCCCCCEECHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCC
KSKIVVNIDRNTGKVTSYRQLKVINDESNENECDLIKLTQAKLIKEDAKVGDTISELISL
CCEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCEEEHHHHHHHHHHHHCCHHHHHHHHC
NTDLVSARIAQQKISEIIKNEELKKQYEEFKDKVGEMRYGIVKQVEYSDLIIDINGIGAY
CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHEEEECEEEEEECCCCHH
LPLRNLIGGESFREGDKVKAYIQAVKRSDDGRQIILSRTHEGFLEALLNQEVPEIADGLI
HHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCEEEEECCHHHHHHHHHCCCCHHHHCCEE
TIKGIARDAGSRSKIAVFSSDRNIDPVGACVGVKGDRIKTIIHELNGEKIDVIHYSSDLG
EEEEHHCCCCCCCEEEEEECCCCCCCHHEEECCCCHHHHHHHHHCCCCEEEEEEECCHHH
QFIIKAITPAEVSKVIIDENENCIELIVAEDQLSLAIGKKGQNVRLASELVGWKIEILST
HHHHHHCCHHHHHEEEECCCCCEEEEEEECCCEEEEECCCCCCEEHHHHHCCEEEEEECC
QQESERRNKEFSQCSVLFAEALNLEEIMGQLLVTEGFSSVEDISNTSIKELASIEGFNED
CHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHCCCHHHHHHHHCCCCHH
IANELHNRANNYLKAENDRKIEELKNLGMEDDVINLALSIDNKIALSKHNIKTLEDIADL
HHHHHHHHHCCCEECCCCCHHHHHHHCCCCCCCEEEEEEECCEEEECCCCCHHHHHHHHC
SNYEFCSILSSSTNNKDNLKDTADLIIIEARKKLGLI
CCCHHHHHHHCCCCCCCCCCHHHHEEEEEEHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11557893 [H]