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The map label for this gene is rbfA [H]

Identifier: 190571748

GI number: 190571748

Start: 1473323

End: 1473673

Strand: Reverse

Name: rbfA [H]

Synonym: WPa_1382

Alternate gene names: 190571748

Gene position: 1473673-1473323 (Counterclockwise)

Preceding gene: 190571749

Following gene: 190571747

Centisome position: 99.41

GC content: 29.06

Gene sequence:

>351_bases
ATGAAAAAGGAAATTAGAAACCTAAAAGTAGCATCGGTATTACATAGGGCAATATCAAAAGTCTTAATGGAAGGTAATGT
TCTTAATGAAAAAGTAGTAGTATCTGATGTAAAGCTAAGCAAAGATTTGAAGAAAGCAGATGTATATATTGTGTTATCTT
CATTAAACATCCAAAATGATAATGATGATATCAGCACTGTTGTTAATGAAATGAACCAATCTGCATGGTCAATACGTAAA
TCTATATTGTGTTATGTTGATTTGCGATTTATACCTGAGTTAGTTTTTAAGCCTGATTTAGCATTCGATAATTTTGTCAA
TGTAAGCAAAATATTACATAATCACACTTAA

Upstream 100 bases:

>100_bases
ATGCGGAATATCGCTAGAGGGTAATATCGATATTAAAGTTGGAGACATTTTGGAAGCTTATCAATTAGTGCAAGAAGAAA
GGACGTTATAGTAGTTGAAT

Downstream 100 bases:

>100_bases
TTAATGTATTTCAACCATTATTTCTCATTAATGAGAATACACAGTTTAACAGGTTTGTGGCTTGTGCTATTTTCTAGCTT
AAGCGGCATTCTTTTAGCCT

Product: ribosomal binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 116; Mature: 116

Protein sequence:

>116_residues
MKKEIRNLKVASVLHRAISKVLMEGNVLNEKVVVSDVKLSKDLKKADVYIVLSSLNIQNDNDDISTVVNEMNQSAWSIRK
SILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT

Sequences:

>Translated_116_residues
MKKEIRNLKVASVLHRAISKVLMEGNVLNEKVVVSDVKLSKDLKKADVYIVLSSLNIQNDNDDISTVVNEMNQSAWSIRK
SILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
>Mature_116_residues
MKKEIRNLKVASVLHRAISKVLMEGNVLNEKVVVSDVKLSKDLKKADVYIVLSSLNIQNDNDDISTVVNEMNQSAWSIRK
SILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA [H]

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- ProDom:   PD007327 [H]

Pfam domain/function: PF02033 RBFA [H]

EC number: NA

Molecular weight: Translated: 13226; Mature: 13226

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKEIRNLKVASVLHRAISKVLMEGNVLNEKVVVSDVKLSKDLKKADVYIVLSSLNIQND
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCC
NDDISTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKEIRNLKVASVLHRAISKVLMEGNVLNEKVVVSDVKLSKDLKKADVYIVLSSLNIQND
CCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCC
NDDISTVVNEMNQSAWSIRKSILCYVDLRFIPELVFKPDLAFDNFVNVSKILHNHT
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA