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The map label for this gene is comF [H]

Identifier: 190571652

GI number: 190571652

Start: 1354382

End: 1355086

Strand: Direct

Name: comF [H]

Synonym: WPa_1277

Alternate gene names: 190571652

Gene position: 1354382-1355086 (Clockwise)

Preceding gene: 190571651

Following gene: 190571654

Centisome position: 91.36

GC content: 30.78

Gene sequence:

>705_bases
ATGAATCTTCTCTTATTAAAAAAAGCTACAGATCTCATATTTCCAAACGTATGCGTAAGTTGTGAACGTATAATTGATAA
AAGTTATGATTTATGTAGTGAATGCAATAAAAAAATCAATTTTTTAACTAAGCATTACTGTAATGTTTGTGGTGTAGTAA
TTCCAGATAACATTGATACATGTGGTAAATGCATCAGTAACCCTTCACCATTTAAAGTATTAAGATCAGTTTTTGCTTAT
GATGAACATAGCAAAAATATGATTATAAATTTTAAATTTTTTGATAATTTAAATTATGTGAAAGTCTATGCAAAGTGGAT
GTACAAAGCTAACAAAGACATATTTCAAAATGCAGAGGTCATAGTTCCCATACCGCTACATAAAATACGCTTATTTAAAC
GTAAATATAATCAAGCAGCATTGCTCGCGAAGGAATTAAGTAAGTTATCTAATTTATCTTATACACCATTTGCAATAAAA
CGTATTCGTCACACCAAATCTCAAGCTGGTCTTTCACTTAAACAGCGTGAAAAAAATTTGAAAAATACTTTTAAAGTAAG
TAACAGCGAAATTATCAAAAACAAAATCGTGATATTGGTTGATGATGTAGTAACAATTGGCGCAACCGCAAGGTCTTGCT
CTCAGGAAATTTTAAACTCTGGTGCCAGAGAAGTGAGAGTGCTATCGCTTGCAAGAACTGTATGA

Upstream 100 bases:

>100_bases
CAAGTATCTTAAAACATATTTATTGGATCAAGTATCGACTATTTCTTAATAATTAGGTTATGAGGAGCATTTTAAAAGGT
ATACCTAACATATTTAATTC

Downstream 100 bases:

>100_bases
AAATCAGCTTTAAGGTATAATTTTCATTTTTGAAAACTGTTTAGTGTCTTAGTACTAACTTGTGTATCATTCCTCTGAAA
AAAAGTCTAGTTATAGTGTA

Product: competence protein f

Products: NA

Alternate protein names: DNA transformation protein ComF; Protein COM101A [H]

Number of amino acids: Translated: 234; Mature: 234

Protein sequence:

>234_residues
MNLLLLKKATDLIFPNVCVSCERIIDKSYDLCSECNKKINFLTKHYCNVCGVVIPDNIDTCGKCISNPSPFKVLRSVFAY
DEHSKNMIINFKFFDNLNYVKVYAKWMYKANKDIFQNAEVIVPIPLHKIRLFKRKYNQAALLAKELSKLSNLSYTPFAIK
RIRHTKSQAGLSLKQREKNLKNTFKVSNSEIIKNKIVILVDDVVTIGATARSCSQEILNSGAREVRVLSLARTV

Sequences:

>Translated_234_residues
MNLLLLKKATDLIFPNVCVSCERIIDKSYDLCSECNKKINFLTKHYCNVCGVVIPDNIDTCGKCISNPSPFKVLRSVFAY
DEHSKNMIINFKFFDNLNYVKVYAKWMYKANKDIFQNAEVIVPIPLHKIRLFKRKYNQAALLAKELSKLSNLSYTPFAIK
RIRHTKSQAGLSLKQREKNLKNTFKVSNSEIIKNKIVILVDDVVTIGATARSCSQEILNSGAREVRVLSLARTV
>Mature_234_residues
MNLLLLKKATDLIFPNVCVSCERIIDKSYDLCSECNKKINFLTKHYCNVCGVVIPDNIDTCGKCISNPSPFKVLRSVFAY
DEHSKNMIINFKFFDNLNYVKVYAKWMYKANKDIFQNAEVIVPIPLHKIRLFKRKYNQAALLAKELSKLSNLSYTPFAIK
RIRHTKSQAGLSLKQREKNLKNTFKVSNSEIIKNKIVILVDDVVTIGATARSCSQEILNSGAREVRVLSLARTV

Specific function: Involved in transformation (competence for DNA uptake) [H]

COG id: COG1040

COG function: function code R; Predicted amidophosphoribosyltransferases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ComF/GntX family [H]

Homologues:

Organism=Escherichia coli, GI87082263, Length=229, Percent_Identity=28.3842794759825, Blast_Score=103, Evalue=1e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005222
- InterPro:   IPR000836 [H]

Pfam domain/function: PF00156 Pribosyltran [H]

EC number: NA

Molecular weight: Translated: 26714; Mature: 26714

Theoretical pI: Translated: 10.15; Mature: 10.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLLLLKKATDLIFPNVCVSCERIIDKSYDLCSECNKKINFLTKHYCNVCGVVIPDNIDT
CCEEEEEHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCH
CGKCISNPSPFKVLRSVFAYDEHSKNMIINFKFFDNLNYVKVYAKWMYKANKDIFQNAEV
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHCCCCE
IVPIPLHKIRLFKRKYNQAALLAKELSKLSNLSYTPFAIKRIRHTKSQAGLSLKQREKNL
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
KNTFKVSNSEIIKNKIVILVDDVVTIGATARSCSQEILNSGAREVRVLSLARTV
HHHHCCCCCHHHHCCEEEEEECHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNLLLLKKATDLIFPNVCVSCERIIDKSYDLCSECNKKINFLTKHYCNVCGVVIPDNIDT
CCEEEEEHHHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCH
CGKCISNPSPFKVLRSVFAYDEHSKNMIINFKFFDNLNYVKVYAKWMYKANKDIFQNAEV
HHHHHCCCCHHHHHHHHHHHCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCHHHHCCCCE
IVPIPLHKIRLFKRKYNQAALLAKELSKLSNLSYTPFAIKRIRHTKSQAGLSLKQREKNL
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCHHHHHHHH
KNTFKVSNSEIIKNKIVILVDDVVTIGATARSCSQEILNSGAREVRVLSLARTV
HHHHCCCCCHHHHCCEEEEEECHHHHCCHHHHHHHHHHHCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1916268; 1856167; 7542800 [H]