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The map label for this gene is ydhJ [H]

Identifier: 190571583

GI number: 190571583

Start: 1278843

End: 1279925

Strand: Direct

Name: ydhJ [H]

Synonym: WPa_1204

Alternate gene names: 190571583

Gene position: 1278843-1279925 (Clockwise)

Preceding gene: 190571582

Following gene: 190571584

Centisome position: 86.27

GC content: 33.24

Gene sequence:

>1083_bases
ATGCAGTTATTTCTAACAAGATTGGTCAATAAATTTTACTGTTTAAGGATGAGAAACAAAGTAATCATCGTTTCCGGTAT
TGCTCTTATTCTACTGTTTTTTATCAACAGTACATTTTTAAAAAAAGATCAGGCGGTTCATAGTGATAATCCAATTAGTA
GTTTTTCATTAAAAACTCAGGATTATACTCCACAAAATCGCACTGTATATTTAAATTTTTCTGGTACGGTAAATCCCTTG
CATAGGTTCAGCCTTGTCTCAAGAACAAGTGGTCAAGTTATTGCTATTTATTTGTCTGATGGTGAAAAAGTAAAAAGAGG
CGATGTAATTTTAAAGATAGAAGATTATGACAGAGTTGAGCAAGTTGAAAAAGCCAAAGCTTTATTAAATCAGCGTGAAA
TTGAGTATGATTCCTCTCGAAAATTGAATACAAAAGGGTATGGAGCACAGATAAGAGTGGAATCAGCTTTTACTGCATTG
CAGAGTGCAAAAGCTGACCTAAAAAGGCTACAGTTGGATTTAGAAAATACTGCGATTAAATCCCCTATTGATGGTTATGT
AGATAAGATCAACGTAAATGAAGGGGATTTTGTTAATCTTGGACATAAGATAACTGACATAGTTAATTTTGATCAGGTTC
TTGTGGTGTTATATGTTTCAGAAAATGAAGTAAATAAAATAAAGCTAGGTAGCACAGCGCAAATTAATTTGCTAGACGGA
AGGGAATTAGTAGGTGAAGTGAGTTTTATTAGTAAAATTGCTGAGCCTAAAACTGGATCTTATAGAGTGGAGGTAAAGGT
AACTGATAATGAGATTATATCTTTGCAAGGACTGACTGCTAGTGTAAGCCTCCCTTCAGGTGAAAGATTTGCATATAAAA
TTCCTTCTTCGGCCTTAAGCTTAAATGACGATGGTATTCTTGGAATAAAGATTGTTGATGATAATAATTATGTAGTATTT
ACAGCAATAGAAATTGTTGATTATGAAGACGATGGAGTTTGGGTAGTCGCAAATAATGAAAGTAAGCCTATAAAGTTAAT
AACATTGGGTCATCTATTTGTTAAGCCTGGTTATAAGGTTTAG

Upstream 100 bases:

>100_bases
TGCAATAAAAACTTATTTATTGTAAGAAAACTTGCTCATATAAAACTATTTATAGAGTGACAATAGCTGTGTTATACTTA
CACTTCTGATTCGAAAATTT

Downstream 100 bases:

>100_bases
CTTGTATATACACTTTTAGTAAAAATCAGATAAAATTCCGTGTTAGCAATAATTATAAAAATACTTACTAATATACTTAT
CTAAGTATTGACAATTATTA

Product: efflux transporter, RND family, MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 360; Mature: 360

Protein sequence:

>360_residues
MQLFLTRLVNKFYCLRMRNKVIIVSGIALILLFFINSTFLKKDQAVHSDNPISSFSLKTQDYTPQNRTVYLNFSGTVNPL
HRFSLVSRTSGQVIAIYLSDGEKVKRGDVILKIEDYDRVEQVEKAKALLNQREIEYDSSRKLNTKGYGAQIRVESAFTAL
QSAKADLKRLQLDLENTAIKSPIDGYVDKINVNEGDFVNLGHKITDIVNFDQVLVVLYVSENEVNKIKLGSTAQINLLDG
RELVGEVSFISKIAEPKTGSYRVEVKVTDNEIISLQGLTASVSLPSGERFAYKIPSSALSLNDDGILGIKIVDDNNYVVF
TAIEIVDYEDDGVWVVANNESKPIKLITLGHLFVKPGYKV

Sequences:

>Translated_360_residues
MQLFLTRLVNKFYCLRMRNKVIIVSGIALILLFFINSTFLKKDQAVHSDNPISSFSLKTQDYTPQNRTVYLNFSGTVNPL
HRFSLVSRTSGQVIAIYLSDGEKVKRGDVILKIEDYDRVEQVEKAKALLNQREIEYDSSRKLNTKGYGAQIRVESAFTAL
QSAKADLKRLQLDLENTAIKSPIDGYVDKINVNEGDFVNLGHKITDIVNFDQVLVVLYVSENEVNKIKLGSTAQINLLDG
RELVGEVSFISKIAEPKTGSYRVEVKVTDNEIISLQGLTASVSLPSGERFAYKIPSSALSLNDDGILGIKIVDDNNYVVF
TAIEIVDYEDDGVWVVANNESKPIKLITLGHLFVKPGYKV
>Mature_360_residues
MQLFLTRLVNKFYCLRMRNKVIIVSGIALILLFFINSTFLKKDQAVHSDNPISSFSLKTQDYTPQNRTVYLNFSGTVNPL
HRFSLVSRTSGQVIAIYLSDGEKVKRGDVILKIEDYDRVEQVEKAKALLNQREIEYDSSRKLNTKGYGAQIRVESAFTAL
QSAKADLKRLQLDLENTAIKSPIDGYVDKINVNEGDFVNLGHKITDIVNFDQVLVVLYVSENEVNKIKLGSTAQINLLDG
RELVGEVSFISKIAEPKTGSYRVEVKVTDNEIISLQGLTASVSLPSGERFAYKIPSSALSLNDDGILGIKIVDDNNYVVF
TAIEIVDYEDDGVWVVANNESKPIKLITLGHLFVKPGYKV

Specific function: Unknown

COG id: COG0845

COG function: function code M; Membrane-fusion protein

Gene ontology:

Cell location: Membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family [H]

Homologues:

Organism=Escherichia coli, GI87081951, Length=186, Percent_Identity=25.8064516129032, Blast_Score=72, Evalue=7e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 40249; Mature: 40249

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
0.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLFLTRLVNKFYCLRMRNKVIIVSGIALILLFFINSTFLKKDQAVHSDNPISSFSLKTQ
CHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEEEEC
DYTPQNRTVYLNFSGTVNPLHRFSLVSRTSGQVIAIYLSDGEKVKRGDVILKIEDYDRVE
CCCCCCCEEEEEECCCCCHHHHEEEEECCCCCEEEEEECCCCEEECCCEEEEECCCHHHH
QVEKAKALLNQREIEYDSSRKLNTKGYGAQIRVESAFTALQSAKADLKRLQLDLENTAIK
HHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCHHCCC
SPIDGYVDKINVNEGDFVNLGHKITDIVNFDQVLVVLYVSENEVNKIKLGSTAQINLLDG
CCCCCCEEEEECCCCCEEECCCHHHHHCCCCEEEEEEEECCCCCCEEEECCEEEEEEECC
RELVGEVSFISKIAEPKTGSYRVEVKVTDNEIISLQGLTASVSLPSGERFAYKIPSSALS
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEECCCCCEEEEECCCCCEE
LNDDGILGIKIVDDNNYVVFTAIEIVDYEDDGVWVVANNESKPIKLITLGHLFVKPGYKV
ECCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCC
>Mature Secondary Structure
MQLFLTRLVNKFYCLRMRNKVIIVSGIALILLFFINSTFLKKDQAVHSDNPISSFSLKTQ
CHHHHHHHHHHHEEEEECCCEEEEHHHHHHHHHHHCCHHHCCCCCCCCCCCCCEEEEEEC
DYTPQNRTVYLNFSGTVNPLHRFSLVSRTSGQVIAIYLSDGEKVKRGDVILKIEDYDRVE
CCCCCCCEEEEEECCCCCHHHHEEEEECCCCCEEEEEECCCCEEECCCEEEEECCCHHHH
QVEKAKALLNQREIEYDSSRKLNTKGYGAQIRVESAFTALQSAKADLKRLQLDLENTAIK
HHHHHHHHHHHHCCCCCCCCEECCCCCCEEEEEHHHHHHHHHHHHHHHHHEEECCHHCCC
SPIDGYVDKINVNEGDFVNLGHKITDIVNFDQVLVVLYVSENEVNKIKLGSTAQINLLDG
CCCCCCEEEEECCCCCEEECCCHHHHHCCCCEEEEEEEECCCCCCEEEECCEEEEEEECC
RELVGEVSFISKIAEPKTGSYRVEVKVTDNEIISLQGLTASVSLPSGERFAYKIPSSALS
HHHHHHHHHHHHHCCCCCCCEEEEEEECCCEEEEEECCEEEEECCCCCEEEEECCCCCEE
LNDDGILGIKIVDDNNYVVFTAIEIVDYEDDGVWVVANNESKPIKLITLGHLFVKPGYKV
ECCCCEEEEEEEECCCEEEEEEEEEEEECCCCEEEEECCCCCCEEEEEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]