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The map label for this gene is psd [H]

Identifier: 190571490

GI number: 190571490

Start: 1184804

End: 1185487

Strand: Direct

Name: psd [H]

Synonym: WPa_1106

Alternate gene names: 190571490

Gene position: 1184804-1185487 (Clockwise)

Preceding gene: 190571483

Following gene: 190571491

Centisome position: 79.92

GC content: 33.77

Gene sequence:

>684_bases
ATGTGCTTTGGTTTACCTAACATAAACAGAGAAGGTTATTTATTTATAGTTGTTTCCTTTATCGTAACATGTATAGCATT
CTCTATATCTTGGGGAGCTGGAATTACTTGCTTATTTCCAACGTTATTATGTACCTATTTTTTTCGTGACCCAGCAAGAG
CTGTACCAAACAATAAGGACTTTATATTAAGTCCTGCTGATGGTGTAATTTCAAAGATAGAAGAAGTTAGTTACTCTTTA
TCAGAAGAGAATGAAGAAGAAAAGAAATTTACACTTGTCAGCATATTTCTAAGCGTTTTGAATGTCCACGTTAATCGTAT
ACCAATATCTGGTACAATAAAGGAAATGAGTTATAAAAAAGGCAAGTTTGTTTCTGCAATGAGTAATAGGTCCAGTAATG
AAAATGAAAAGCAGGTTATTGTGATTGAGTATGAAAAGGAAAAAGAAATCATTGTGGAACAAATAGCTGGATTTATCGCA
CGCCGCATTGTTTGTAATTTAAGAGCGTCTCAGAATGTAAAAGCAGGTGAAAGGTTTGGAATTATAAGATTTGGCAGTAG
AGTAAATATTTATATCCCTGCTGGAATAGAGGTAAGAGTCTCAGAAGGCCAAACTGTTATTGGTGGTGAGACAGTTATAG
CAGATTTAAATAAACAAGAGAAGCTTACCTTTGACATTGTATGA

Upstream 100 bases:

>100_bases
TTGCTTATATAATCATTCCAAAAGTGAAGCAGTGAAAAAAAGCTTTTCATGAGAAATTATAAATGATAAATTGTTAATAA
TGAATTATCGAGAATAAATT

Downstream 100 bases:

>100_bases
ATAACGATGAAAGTAACGGTAAATCCTTACCTATTACCAAGTTATTTCCAAATTTTATAACTTTACTAGGTTTATGTGCT
GGCCTTACTTCACTTAAATT

Product: phosphatidylserine decarboxylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 227

Protein sequence:

>227_residues
MCFGLPNINREGYLFIVVSFIVTCIAFSISWGAGITCLFPTLLCTYFFRDPARAVPNNKDFILSPADGVISKIEEVSYSL
SEENEEEKKFTLVSIFLSVLNVHVNRIPISGTIKEMSYKKGKFVSAMSNRSSNENEKQVIVIEYEKEKEIIVEQIAGFIA
RRIVCNLRASQNVKAGERFGIIRFGSRVNIYIPAGIEVRVSEGQTVIGGETVIADLNKQEKLTFDIV

Sequences:

>Translated_227_residues
MCFGLPNINREGYLFIVVSFIVTCIAFSISWGAGITCLFPTLLCTYFFRDPARAVPNNKDFILSPADGVISKIEEVSYSL
SEENEEEKKFTLVSIFLSVLNVHVNRIPISGTIKEMSYKKGKFVSAMSNRSSNENEKQVIVIEYEKEKEIIVEQIAGFIA
RRIVCNLRASQNVKAGERFGIIRFGSRVNIYIPAGIEVRVSEGQTVIGGETVIADLNKQEKLTFDIV
>Mature_227_residues
MCFGLPNINREGYLFIVVSFIVTCIAFSISWGAGITCLFPTLLCTYFFRDPARAVPNNKDFILSPADGVISKIEEVSYSL
SEENEEEKKFTLVSIFLSVLNVHVNRIPISGTIKEMSYKKGKFVSAMSNRSSNENEKQVIVIEYEKEKEIIVEQIAGFIA
RRIVCNLRASQNVKAGERFGIIRFGSRVNIYIPAGIEVRVSEGQTVIGGETVIADLNKQEKLTFDIV

Specific function: Unknown

COG id: COG0688

COG function: function code I; Phosphatidylserine decarboxylase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the phosphatidylserine decarboxylase family. Type 3 subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003817
- InterPro:   IPR004428 [H]

Pfam domain/function: PF02666 PS_Dcarbxylase [H]

EC number: =4.1.1.65 [H]

Molecular weight: Translated: 25405; Mature: 25405

Theoretical pI: Translated: 7.09; Mature: 7.09

Prosite motif: PS00389 ATPASE_DELTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFGLPNINREGYLFIVVSFIVTCIAFSISWGAGITCLFPTLLCTYFFRDPARAVPNNKD
CCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCC
FILSPADGVISKIEEVSYSLSEENEEEKKFTLVSIFLSVLNVHVNRIPISGTIKEMSYKK
EEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCC
GKFVSAMSNRSSNENEKQVIVIEYEKEKEIIVEQIAGFIARRIVCNLRASQNVKAGERFG
CCHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IIRFGSRVNIYIPAGIEVRVSEGQTVIGGETVIADLNKQEKLTFDIV
EEEECCEEEEEECCCEEEEECCCCEEECCCEEEECCCCCCCEEEECC
>Mature Secondary Structure
MCFGLPNINREGYLFIVVSFIVTCIAFSISWGAGITCLFPTLLCTYFFRDPARAVPNNKD
CCCCCCCCCCCCEEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCHHHCCCCCC
FILSPADGVISKIEEVSYSLSEENEEEKKFTLVSIFLSVLNVHVNRIPISGTIKEMSYKK
EEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHCCC
GKFVSAMSNRSSNENEKQVIVIEYEKEKEIIVEQIAGFIARRIVCNLRASQNVKAGERFG
CCHHHHHHCCCCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEE
IIRFGSRVNIYIPAGIEVRVSEGQTVIGGETVIADLNKQEKLTFDIV
EEEECCEEEEEECCCEEEEECCCCEEECCCEEEECCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA