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The map label for this gene is rpoZ

Identifier: 190571446

GI number: 190571446

Start: 1129362

End: 1129754

Strand: Direct

Name: rpoZ

Synonym: WPa_1059

Alternate gene names: 190571446

Gene position: 1129362-1129754 (Clockwise)

Preceding gene: 190571445

Following gene: 190571447

Centisome position: 76.18

GC content: 35.37

Gene sequence:

>393_bases
ATGGTTGAGTCTATTGTAGAAAAGTGTGTAGAACAGGTACACAACCGTTTTAAATTGGTTCTGCTAGCAAGTCAAAGAAC
GCATGATTTGAGTACAGGGGCAAGCGATCCCGTTGAAATGGTTAAGTTTAAAGATCATAAGGATACGATAGTTTCTTTAT
ATGAAATAGCAGAAAAGAAGGTGAATACTCATGAGTTGTTTAACCTTTTGGTGAAAAGGTGCAAGGAGCACATGAAAGGA
AACACAGATAATACTTATATTAATAGTCCAAGTAAGCTAGCAAATTTGTTAAATTTTTCTGATCATCAACTTAACACAAG
TCTGGATGTAAGTCAAGAAAGCCACGATGATGAAATAGATGATCAAGATAGTGGTGAAGAAGTACCGATTTAG

Upstream 100 bases:

>100_bases
TAAAGAAGAAAAAGTAGAATGTAGAATTGGATCTCAATAGATCTGAAGTTGACATCTTATTTTTTGTGATATAGTATAAA
GCTTATCAAGGTGGTATTTT

Downstream 100 bases:

>100_bases
AAATCTACAGAGGTTATAATAGTTTATAAATGATTAGTATTGCTATCTATGTGCTTTTGTTCTGTATGAGTGTAATGTTA
TGTTGTATAGTATTTAGGTC

Product: DNA-directed RNA polymerase, omega subunit

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 130; Mature: 130

Protein sequence:

>130_residues
MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKKVNTHELFNLLVKRCKEHMKG
NTDNTYINSPSKLANLLNFSDHQLNTSLDVSQESHDDEIDDQDSGEEVPI

Sequences:

>Translated_130_residues
MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKKVNTHELFNLLVKRCKEHMKG
NTDNTYINSPSKLANLLNFSDHQLNTSLDVSQESHDDEIDDQDSGEEVPI
>Mature_130_residues
MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKKVNTHELFNLLVKRCKEHMKG
NTDNTYINSPSKLANLLNFSDHQLNTSLDVSQESHDDEIDDQDSGEEVPI

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_WOLPP (B3CMP5)

Other databases:

- EMBL:   AM999887
- RefSeq:   YP_001975804.1
- EnsemblBacteria:   EBWOLT00000000325
- GeneID:   6385525
- GenomeReviews:   AM999887_GR
- KEGG:   wpi:WPa_1059
- GeneTree:   EBGT00050000031149
- HOGENOM:   HBG750946
- OMA:   NTHELFN
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 14809; Mature: 14809

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKK
CHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHC
VNTHELFNLLVKRCKEHMKGNTDNTYINSPSKLANLLNFSDHQLNTSLDVSQESHDDEID
CCHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DQDSGEEVPI
CCCCCCCCCC
>Mature Secondary Structure
MVESIVEKCVEQVHNRFKLVLLASQRTHDLSTGASDPVEMVKFKDHKDTIVSLYEIAEKK
CHHHHHHHHHHHHHHHHEEHEECCCCCCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHC
VNTHELFNLLVKRCKEHMKGNTDNTYINSPSKLANLLNFSDHQLNTSLDVSQESHDDEID
CCHHHHHHHHHHHHHHHHCCCCCCCEECCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
DQDSGEEVPI
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA