| Definition | Wolbachia endosymbiont of Culex quinquefasciatus Pel, complete genome. |
|---|---|
| Accession | NC_010981 |
| Length | 1,482,455 |
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The map label for this gene is virB4 [H]
Identifier: 190571011
GI number: 190571011
Start: 655142
End: 657547
Strand: Reverse
Name: virB4 [H]
Synonym: WPa_0603
Alternate gene names: 190571011
Gene position: 657547-655142 (Counterclockwise)
Preceding gene: 190571012
Following gene: 190571010
Centisome position: 44.36
GC content: 33.87
Gene sequence:
>2406_bases ATGTTGAGATTTAGAGCTATTCAATCAAAGAATAAATCTATTCTAAGTAGAGAGGTTCACGCTGCCGAATTTATACCTTA TTCTTGCTATTGGAATAGTACAACCTTGATAACAAAGCAGAATTGGTTAGTTAAATTTATAAAATTAAATGGCTTTGCGT TTGAAACGGCCGATGATGAAGACTTGGTGATACAAAATAATATCAGAAATCAGATGCTAAGAAGCATTTCATCTCCAGCA TTTAGTTTGTACTTTCATACCATCAGACGTAAGAAAAATATTTTTTCTGATGAATTTGCAAATCAGAGTTTACCAAATTT TTTTGCTAACCATGTAAATCTAAAATGGAGAGAAAAACACGCAACTAGGCAATCTTTTATTAATGATTTATACATTACGA TTATTCGTAGGGCAGATACAAAGGGAGTAGAATTTTTATCACATCTACTGAAAAAATTTGGGCATGTAACTTCAAAACAT GCTTGGGAAAGTGATATGCGTGATACCTATGAAGATTTAGAGGAAACGACAAATCGTATAGTAACAAGCCTTAGGAATTA TTCGCCTAAAGTCCTTGGAGTAAAAGAAACTCCAAACGGACTGTTTTGTGAAATAATGGAGTTTCTGTCTAGAGTTGTAA ATTGTGGCTTTGTTACAAATACGCTTTTTCCACTAAAAACTGAAATATCAAGATACTTACCAGTTCATAGGTTATTTTTT GGCCATAAGATGATACAGGTTGTGACTCATAATGAAAGTAAATATGCTGGAATAGTTAGTATCAAAGAATATGGAAATAA TACTTCCGCAGGAATGCTTGATTCTTTTTTACAACTTCCTTATGAATTTATTATCACGCAGTCTTTTCAATTTACAAATA GGCAAATGGCAATTGCGAAAATGCAGATACAGCAAAATCGTATGATACAATCTGCAGATAAAGCTATTTCTCAAATAGCA GAAATTTCTCATGCGCTTGATGATGCAATGAGTGGTAAAATTGCGTTTGGTGAACACCATTTAACTATCTTATGTATAGA AAAAAGCCCTAAATCATTGGACAATGCTTTATCATTGGTTGAATCGGAGCTTTCTAATTGTGGTGTTTATCCTGTTCGTG AGAGGGTTAATTTAGAACCAGCATTTTGGGCGCAAATTCCTGGTAATTTTGATTATATAGTAAGAAAAGGTACAATAAGT AGTCTTAATTTGGCCGGTTTTGCATCTCAACATAATTATCCTACTGGTAAAAAATTCAATAACCACTGGGGAGATGCTGT TACAGTTTTTGATACAACATCTGGCACTCCATTTTTCTTCAACTTTCATATAAGGGATGTTGGACATACTATGATAATTG GGCCAACAGGTGCTGGCAAAACTGTTTTAATGAATTTTTTATGTGCTCAAGCAATGAAATTTTCTCCAAGAATATTCTTT TTTGATAAAGATCGCGGTGCAGAAATTTTTTTAAGAGCACTTGGTGGTATCTATACTATAATAGAACCAAGAACTAAGAC AAATTTTAATCCTCTGCAACTTGACGATACTCCTGATAATAAAACATTTTTGATGGAATGGATAAAATCTTTAATTTTAG TGTACAACGATAAATTCACTTCAGAAGATATTGCTAGAATTAATGATGCAATTGAGGGAAATTTTAAATTAAAAAAAGAA GACAGATTTTTGAGAAATCTTGTACCATTTTTAGGACTTGCGGGCCCTGATACTCTAGCTGGAGCAATATCTATGTGGCA TGATGATGGCTCTCATTCTGCAATATTTGACAATAAAGAAGATTTGCTAGATTTTTCAAAAGCAAGAGTGTTTGGCTTTG AAATGGCTAGCTTGCTAAAAGATCCTGTTGCTCTTGGGCCGGTCTTGATTTATTTGTTTCATAGGATTAGTATATCGCTT GATGGCACTCCATCCATTATTGTTCTTGATGAAGCATGGGCGTTAATAGATAATCCAGTTTTTGCACCTAAGATAAAAGA CTGGTTGAAAGTGCTGAGAAAGTTAAATGCTTTTGTGGTTTTTGCTACTCAGAGTGTTGAAGATGCAAGTAAAAGTGCTA TTAGTGATACGCTTGTACAGCAGACAGCAACACAAATTTTTTTGCCAAATCTGAAAGCTACTAGTGTCTATCGAGATGTT TTTATGTTAACTGAACGTGAGTACATACTGATCAAACACACAGATCCAAGTACTAGATTCTTTTTAGTAAAGCAGGGAGT TAATGCTGTAGTAGCTAGAATAGATCTGAAAGATTTGGATGATGTGGTCAACGTGTTATCTGGACGTGCGGAAAGTGTTC TATTGTTATATGATATACTGAAAGAAGTCGGAGATGATCCAAAGATGTGGTTGCCTGTGTTTTATCAAAAGGTGAAAAAT GTTTAA
Upstream 100 bases:
>100_bases GTTTATTGAGTTATTTATGGTAAAGTTGGGAAAATGTTCCAAATGTTTAAATCGGTTTTATCATGGAGCCAATTCTTATG ACATTACTTGATGTTATGCA
Downstream 100 bases:
>100_bases AACTAAACTGTCATTACTGTTAGTTGCGATATTTTTGTTAAATATAGATTTTTTGCTCTCGTATCCAGTGTTTGCAGATA CAGTAAGTGGTACTGACAAA
Product: type IV secretion system ATPase VirB4
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 801; Mature: 801
Protein sequence:
>801_residues MLRFRAIQSKNKSILSREVHAAEFIPYSCYWNSTTLITKQNWLVKFIKLNGFAFETADDEDLVIQNNIRNQMLRSISSPA FSLYFHTIRRKKNIFSDEFANQSLPNFFANHVNLKWREKHATRQSFINDLYITIIRRADTKGVEFLSHLLKKFGHVTSKH AWESDMRDTYEDLEETTNRIVTSLRNYSPKVLGVKETPNGLFCEIMEFLSRVVNCGFVTNTLFPLKTEISRYLPVHRLFF GHKMIQVVTHNESKYAGIVSIKEYGNNTSAGMLDSFLQLPYEFIITQSFQFTNRQMAIAKMQIQQNRMIQSADKAISQIA EISHALDDAMSGKIAFGEHHLTILCIEKSPKSLDNALSLVESELSNCGVYPVRERVNLEPAFWAQIPGNFDYIVRKGTIS SLNLAGFASQHNYPTGKKFNNHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFF FDKDRGAEIFLRALGGIYTIIEPRTKTNFNPLQLDDTPDNKTFLMEWIKSLILVYNDKFTSEDIARINDAIEGNFKLKKE DRFLRNLVPFLGLAGPDTLAGAISMWHDDGSHSAIFDNKEDLLDFSKARVFGFEMASLLKDPVALGPVLIYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNAFVVFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSVYRDV FMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKDLDDVVNVLSGRAESVLLLYDILKEVGDDPKMWLPVFYQKVKN V
Sequences:
>Translated_801_residues MLRFRAIQSKNKSILSREVHAAEFIPYSCYWNSTTLITKQNWLVKFIKLNGFAFETADDEDLVIQNNIRNQMLRSISSPA FSLYFHTIRRKKNIFSDEFANQSLPNFFANHVNLKWREKHATRQSFINDLYITIIRRADTKGVEFLSHLLKKFGHVTSKH AWESDMRDTYEDLEETTNRIVTSLRNYSPKVLGVKETPNGLFCEIMEFLSRVVNCGFVTNTLFPLKTEISRYLPVHRLFF GHKMIQVVTHNESKYAGIVSIKEYGNNTSAGMLDSFLQLPYEFIITQSFQFTNRQMAIAKMQIQQNRMIQSADKAISQIA EISHALDDAMSGKIAFGEHHLTILCIEKSPKSLDNALSLVESELSNCGVYPVRERVNLEPAFWAQIPGNFDYIVRKGTIS SLNLAGFASQHNYPTGKKFNNHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFF FDKDRGAEIFLRALGGIYTIIEPRTKTNFNPLQLDDTPDNKTFLMEWIKSLILVYNDKFTSEDIARINDAIEGNFKLKKE DRFLRNLVPFLGLAGPDTLAGAISMWHDDGSHSAIFDNKEDLLDFSKARVFGFEMASLLKDPVALGPVLIYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNAFVVFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSVYRDV FMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKDLDDVVNVLSGRAESVLLLYDILKEVGDDPKMWLPVFYQKVKN V >Mature_801_residues MLRFRAIQSKNKSILSREVHAAEFIPYSCYWNSTTLITKQNWLVKFIKLNGFAFETADDEDLVIQNNIRNQMLRSISSPA FSLYFHTIRRKKNIFSDEFANQSLPNFFANHVNLKWREKHATRQSFINDLYITIIRRADTKGVEFLSHLLKKFGHVTSKH AWESDMRDTYEDLEETTNRIVTSLRNYSPKVLGVKETPNGLFCEIMEFLSRVVNCGFVTNTLFPLKTEISRYLPVHRLFF GHKMIQVVTHNESKYAGIVSIKEYGNNTSAGMLDSFLQLPYEFIITQSFQFTNRQMAIAKMQIQQNRMIQSADKAISQIA EISHALDDAMSGKIAFGEHHLTILCIEKSPKSLDNALSLVESELSNCGVYPVRERVNLEPAFWAQIPGNFDYIVRKGTIS SLNLAGFASQHNYPTGKKFNNHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFF FDKDRGAEIFLRALGGIYTIIEPRTKTNFNPLQLDDTPDNKTFLMEWIKSLILVYNDKFTSEDIARINDAIEGNFKLKKE DRFLRNLVPFLGLAGPDTLAGAISMWHDDGSHSAIFDNKEDLLDFSKARVFGFEMASLLKDPVALGPVLIYLFHRISISL DGTPSIIVLDEAWALIDNPVFAPKIKDWLKVLRKLNAFVVFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSVYRDV FMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKDLDDVVNVLSGRAESVLLLYDILKEVGDDPKMWLPVFYQKVKN V
Specific function: The type IV secretion system VirB/VirD4 is a major virulence determinant for subversion of human endothelial cell (HEC) function. VirB-dependent changes of HEC include massive cytoskeletal rearrangements, a proinflammatory activation by nuclear factor NF-
COG id: COG3451
COG function: function code U; Type IV secretory pathway, VirB4 components
Gene ontology:
Cell location: Cell inner membrane (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the trbE/virB4 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003593 - InterPro: IPR004346 - InterPro: IPR018145 [H]
Pfam domain/function: PF03135 CagE_TrbE_VirB [H]
EC number: NA
Molecular weight: Translated: 91290; Mature: 91290
Theoretical pI: Translated: 8.33; Mature: 8.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRFRAIQSKNKSILSREVHAAEFIPYSCYWNSTTLITKQNWLVKFIKLNGFAFETADDE CCCEECHHCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCCEEEEEEECCEEEECCCCC DLVIQNNIRNQMLRSISSPAFSLYFHTIRRKKNIFSDEFANQSLPNFFANHVNLKWREKH CEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHCCCEEEHHHH ATRQSFINDLYITIIRRADTKGVEFLSHLLKKFGHVTSKHAWESDMRDTYEDLEETTNRI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VTSLRNYSPKVLGVKETPNGLFCEIMEFLSRVVNCGFVTNTLFPLKTEISRYLPVHRLFF HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCHHHHHHH GHKMIQVVTHNESKYAGIVSIKEYGNNTSAGMLDSFLQLPYEFIITQSFQFTNRQMAIAK CCCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHEEECCCHHCCCHHHHHH MQIQQNRMIQSADKAISQIAEISHALDDAMSGKIAFGEHHLTILCIEKSPKSLDNALSLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCHHHHHHHHHH ESELSNCGVYPVRERVNLEPAFWAQIPGNFDYIVRKGTISSLNLAGFASQHNYPTGKKFN HHHHHHCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCC NHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFF CCCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE FDKDRGAEIFLRALGGIYTIIEPRTKTNFNPLQLDDTPDNKTFLMEWIKSLILVYNDKFT EECCCCHHHHHHHHCCEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCC SEDIARINDAIEGNFKLKKEDRFLRNLVPFLGLAGPDTLAGAISMWHDDGSHSAIFDNKE HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHH DLLDFSKARVFGFEMASLLKDPVALGPVLIYLFHRISISLDGTPSIIVLDEAWALIDNPV HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCCCC FAPKIKDWLKVLRKLNAFVVFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSVYRDV CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH FMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKDLDDVVNVLSGRAESVLLLYDIL HHEECCCEEEEEECCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHH KEVGDDPKMWLPVFYQKVKNV HHHCCCCCCHHHHHHHHHCCC >Mature Secondary Structure MLRFRAIQSKNKSILSREVHAAEFIPYSCYWNSTTLITKQNWLVKFIKLNGFAFETADDE CCCEECHHCCCHHHHHHHHHHHHCCEEEEEECCEEEEEECCCEEEEEEECCEEEECCCCC DLVIQNNIRNQMLRSISSPAFSLYFHTIRRKKNIFSDEFANQSLPNFFANHVNLKWREKH CEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHCCCCCHHHHHHCCCEEEHHHH ATRQSFINDLYITIIRRADTKGVEFLSHLLKKFGHVTSKHAWESDMRDTYEDLEETTNRI HHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH VTSLRNYSPKVLGVKETPNGLFCEIMEFLSRVVNCGFVTNTLFPLKTEISRYLPVHRLFF HHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCHHHCCCCHHHHHHHHHCHHHHHHH GHKMIQVVTHNESKYAGIVSIKEYGNNTSAGMLDSFLQLPYEFIITQSFQFTNRQMAIAK CCCEEEEEECCCCCEEEEEEEECCCCCCCHHHHHHHHHCCHHHEEECCCHHCCCHHHHHH MQIQQNRMIQSADKAISQIAEISHALDDAMSGKIAFGEHHLTILCIEKSPKSLDNALSLV HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCEEEEEECCCCHHHHHHHHHH ESELSNCGVYPVRERVNLEPAFWAQIPGNFDYIVRKGTISSLNLAGFASQHNYPTGKKFN HHHHHHCCCCCCHHHCCCCCCEEEECCCCCEEEEECCCCCCCEEEEECCCCCCCCCCCCC NHWGDAVTVFDTTSGTPFFFNFHIRDVGHTMIIGPTGAGKTVLMNFLCAQAMKFSPRIFF CCCCCEEEEEECCCCCEEEEEEEEEECCCEEEEECCCCCHHHHHHHHHHHHHHCCCEEEE FDKDRGAEIFLRALGGIYTIIEPRTKTNFNPLQLDDTPDNKTFLMEWIKSLILVYNDKFT EECCCCHHHHHHHHCCEEEEECCCCCCCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCC SEDIARINDAIEGNFKLKKEDRFLRNLVPFLGLAGPDTLAGAISMWHDDGSHSAIFDNKE HHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCCCCHH DLLDFSKARVFGFEMASLLKDPVALGPVLIYLFHRISISLDGTPSIIVLDEAWALIDNPV HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHEEEECCCCCEEEEECCHHHHCCCC FAPKIKDWLKVLRKLNAFVVFATQSVEDASKSAISDTLVQQTATQIFLPNLKATSVYRDV CCHHHHHHHHHHHHCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHH FMLTEREYILIKHTDPSTRFFLVKQGVNAVVARIDLKDLDDVVNVLSGRAESVLLLYDIL HHEECCCEEEEEECCCCCEEEEEECCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHHHHH KEVGDDPKMWLPVFYQKVKNV HHHCCCCCCHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 10749166; 10882236; 7494028 [H]