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The map label for this gene is ubiD [H]

Identifier: 190570931

GI number: 190570931

Start: 546601

End: 548088

Strand: Reverse

Name: ubiD [H]

Synonym: WPa_0511

Alternate gene names: 190570931

Gene position: 548088-546601 (Counterclockwise)

Preceding gene: 190570932

Following gene: 190570930

Centisome position: 36.97

GC content: 39.72

Gene sequence:

>1488_bases
ATGTACAATAACTTACGCGACTTCATCAGAGCATTAGAAGAAAAAAAAGATCTAATTAGAATTAAAAAAGAAGTTTCAAC
TATTCTTGAAATGACAGAAATTCATCGTAGGGTTTTGTCAAACAAGGGACCAGCTATCATCTTTGAAAATGTTGTCACAG
AAAATGGCAAAAATTCAATTCCCGTTTTAGTGAATTTATTTGGTACTATTGAGAGAATTGCATTCGGACTTGGTATAAAT
TCTGATGAATTAAGGGATCTGGGTAAACTTCTAGCATTTTTGCGATCACCTGAGCCACCAAAAACCTTCAAAGATGCTGT
GAAAATGTTTCCTCTACTAAAAGTTGTATTGTCGATGCGGAGCAAAGTTGTGAGCAAAGCCCCATGTCAAGAGGTGGTGC
TAACTGGGGATGAGGTGGATCTTAGTTTGCTACCTATTCAGACATGCTGGCCAAACGAGCCTGCACCGCTTATCACTTGG
CCACTTGTGGTAACAAAAGGACCAACAGCAGACAAGCAAGATAATTTCAATCTTGGAATATATCGTATGCAGGTTGTGAA
TAAAAAAACGACTCTCATGCGCTGGCTTGCACATCGTGGTGGTGCAGGTCACCATAAACGGTGGAAGGAGAGGGGACAAA
ATATGAAGTTTCCTGCGGCTGCTGTGATTGGTAGCGATCCTGCAACAATTATTGCTGCGGTAACTCCGGTGCCGGAGACT
TTATCAGAATACCAATTTGCCGGGCTGCTGCGAAAAAAACCACTTGAGCTTGTAAATTGTAAAACTATTCCTCTTCAGGT
TCCAGCTCATGCTGAGATCGTTCTGGAAGGATATGTAAGTTTAGATAAGTATAGAGATGAAGGGCCATACGGAGACCATA
CCGGTTACTATAATGCTGTTGAACAGTTTCCTGAGTTTAACATTACTGCAATTACAATGCGCAAAGATCCAATTTATCTC
AGCACTTTCACTGGCAAGCCACCAGATGAACCATCAATTCTTGGTGAAGCACTCAACGAAATTTTTGTGCCGATTCTTAT
CAATCAGTTTCCGGAGATAGTAGATTTTTATCTGCCTCCAGAAGGTTGTTCATATAGAATAGCGGTAGTATCGATAAAAA
AGGCTTATCCAGGGCATGCAAAAAGAATTGTTATGGGCATACTCTCTTTTCTCAAACAGTTTTTATATACCAAATTTATC
ATAGTTGTTGATGATGATATAAATATACGTGATTGGAAGGAAGTGATGTGGGCAATGTCAACAAGAATGGACCCTGTGCG
TGATACAATTACGATAGAGAATGCCCCAATTGATTATTTAGATTTTGCTTCCCCTGAAAGTGGTCTCGGAGGTAAAATAG
GGTTTGATGCAACAAACAAACTTCCACCTGAAACCAAACGAGAATGGGGAAGAAAAATTGAAATGAGCGAGGAAATAATA
AAGAAAGTTACAGAGAAGTGGAAGGAATATGGGTTGACAGATGATTGA

Upstream 100 bases:

>100_bases
AAAGCGAATTGGAGAATAATTTTTCTAGAGCCTCTATAATAATAAGTGAATGAGTTGTGCTGGGAAAAGCACTTCTTAAA
AGGCTTAAAATTTTTAAAAT

Downstream 100 bases:

>100_bases
GATATGATGTAGACTACCGCCGTGTATTTAGGTGTGGTTTGTGAGGCTTTTATATCTTTTATTTTTGTCGGCATGTTTTT
CTCTGTATTACTATGTGGGT

Product: 3-octaprenyl-4-hydroxybenzoate carboxy-lyase

Products: NA

Alternate protein names: Polyprenyl p-hydroxybenzoate decarboxylase [H]

Number of amino acids: Translated: 495; Mature: 495

Protein sequence:

>495_residues
MYNNLRDFIRALEEKKDLIRIKKEVSTILEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIAFGLGIN
SDELRDLGKLLAFLRSPEPPKTFKDAVKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITW
PLVVTKGPTADKQDNFNLGIYRMQVVNKKTTLMRWLAHRGGAGHHKRWKERGQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDKYRDEGPYGDHTGYYNAVEQFPEFNITAITMRKDPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKAYPGHAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTITIENAPIDYLDFASPESGLGGKIGFDATNKLPPETKREWGRKIEMSEEII
KKVTEKWKEYGLTDD

Sequences:

>Translated_495_residues
MYNNLRDFIRALEEKKDLIRIKKEVSTILEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIAFGLGIN
SDELRDLGKLLAFLRSPEPPKTFKDAVKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITW
PLVVTKGPTADKQDNFNLGIYRMQVVNKKTTLMRWLAHRGGAGHHKRWKERGQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDKYRDEGPYGDHTGYYNAVEQFPEFNITAITMRKDPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKAYPGHAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTITIENAPIDYLDFASPESGLGGKIGFDATNKLPPETKREWGRKIEMSEEII
KKVTEKWKEYGLTDD
>Mature_495_residues
MYNNLRDFIRALEEKKDLIRIKKEVSTILEMTEIHRRVLSNKGPAIIFENVVTENGKNSIPVLVNLFGTIERIAFGLGIN
SDELRDLGKLLAFLRSPEPPKTFKDAVKMFPLLKVVLSMRSKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITW
PLVVTKGPTADKQDNFNLGIYRMQVVNKKTTLMRWLAHRGGAGHHKRWKERGQNMKFPAAAVIGSDPATIIAAVTPVPET
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDKYRDEGPYGDHTGYYNAVEQFPEFNITAITMRKDPIYL
STFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPPEGCSYRIAVVSIKKAYPGHAKRIVMGILSFLKQFLYTKFI
IVVDDDINIRDWKEVMWAMSTRMDPVRDTITIENAPIDYLDFASPESGLGGKIGFDATNKLPPETKREWGRKIEMSEEII
KKVTEKWKEYGLTDD

Specific function: Catalyzes the decarboxylation of 3-octaprenyl-4-hydroxy benzoate to 2-octaprenylphenol [H]

COG id: COG0043

COG function: function code H; 3-polyprenyl-4-hydroxybenzoate decarboxylase and related decarboxylases

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ubiD family [H]

Homologues:

Organism=Escherichia coli, GI1790277, Length=495, Percent_Identity=57.1717171717172, Blast_Score=595, Evalue=1e-171,
Organism=Saccharomyces cerevisiae, GI6320748, Length=519, Percent_Identity=26.7822736030828, Blast_Score=130, Evalue=4e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002830
- InterPro:   IPR009002 [H]

Pfam domain/function: PF01977 UbiD [H]

EC number: 4.1.1.-

Molecular weight: Translated: 56006; Mature: 56006

Theoretical pI: Translated: 7.57; Mature: 7.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYNNLRDFIRALEEKKDLIRIKKEVSTILEMTEIHRRVLSNKGPAIIFENVVTENGKNSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
PVLVNLFGTIERIAFGLGINSDELRDLGKLLAFLRSPEPPKTFKDAVKMFPLLKVVLSMR
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITWPLVVTKGPTADKQDNFNLGI
HHHHHCCCCHHEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEE
YRMQVVNKKTTLMRWLAHRGGAGHHKRWKERGQNMKFPAAAVIGSDPATIIAAVTPVPET
EEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCHHH
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDKYRDEGPYGDHTGYYNAV
HHHHHHHHHHHHCCHHHCCCEECEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHH
EQFPEFNITAITMRKDPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPP
HHCCCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHEEECCC
EGCSYRIAVVSIKKAYPGHAKRIVMGILSFLKQFLYTKFIIVVDDDINIRDWKEVMWAMS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH
TRMDPVRDTITIENAPIDYLDFASPESGLGGKIGFDATNKLPPETKREWGRKIEMSEEII
HCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHH
KKVTEKWKEYGLTDD
HHHHHHHHHCCCCCC
>Mature Secondary Structure
MYNNLRDFIRALEEKKDLIRIKKEVSTILEMTEIHRRVLSNKGPAIIFENVVTENGKNSI
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEHHHHCCCCCCC
PVLVNLFGTIERIAFGLGINSDELRDLGKLLAFLRSPEPPKTFKDAVKMFPLLKVVLSMR
CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH
SKVVSKAPCQEVVLTGDEVDLSLLPIQTCWPNEPAPLITWPLVVTKGPTADKQDNFNLGI
HHHHHCCCCHHEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCEE
YRMQVVNKKTTLMRWLAHRGGAGHHKRWKERGQNMKFPAAAVIGSDPATIIAAVTPVPET
EEEEEHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCCEEEEECCCCCEEEEEECCCHHH
LSEYQFAGLLRKKPLELVNCKTIPLQVPAHAEIVLEGYVSLDKYRDEGPYGDHTGYYNAV
HHHHHHHHHHHHCCHHHCCCEECEEECCCCCEEHHHHHHHHHHHCCCCCCCCCCCHHHHH
EQFPEFNITAITMRKDPIYLSTFTGKPPDEPSILGEALNEIFVPILINQFPEIVDFYLPP
HHCCCCCEEEEEEECCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCHHHHEEECCC
EGCSYRIAVVSIKKAYPGHAKRIVMGILSFLKQFLYTKFIIVVDDDINIRDWKEVMWAMS
CCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHEEEEEECCCCCHHHHHHHHHHHH
TRMDPVRDTITIENAPIDYLDFASPESGLGGKIGFDATNKLPPETKREWGRKIEMSEEII
HCCCCCCCEEEECCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHH
KKVTEKWKEYGLTDD
HHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA