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The map label for this gene is smpB [H]

Identifier: 190570927

GI number: 190570927

Start: 543944

End: 544393

Strand: Direct

Name: smpB [H]

Synonym: WPa_0507

Alternate gene names: 190570927

Gene position: 543944-544393 (Clockwise)

Preceding gene: 190570926

Following gene: 190570928

Centisome position: 36.69

GC content: 32.67

Gene sequence:

>450_bases
ATGGAAGTTATTGCAGAAAATAGAAAAGCAAGGTTTGAATACTTTATCTTAGAAGAATTTGAAGCAGGTATGATCCTCTT
AAGTAGTGAAGTGAAATCACTAAGGGAAAGAAAAGCAAACATTTCTGATGCTTACGTTACTGAAAAAAAAGGTGAAATAT
GGCTAAACAATATGCATATCGCAGAGTATAAAGCTGCAAACCAAAAGAATCACAAGCCAAAAAGAGAACGAAAATTGCTT
TTGCATAAAAAAGAGATAAATAAGCTAATTGGTCAAATCAAAACCTCTGGAATAACTGTTGTGCCACTTTCTATCTATTT
TAATGATAAAGGGTTGGCAAAAACTAAAATTGCCATTGTGAAAGGAAAAAAACTCTATGATAAGAGAGCAACCATAAAGC
AGAGAGAGTGGGAACGTGAGAAAAGTAGATTGTCTAAGAATAATTTGTAG

Upstream 100 bases:

>100_bases
GAACTTTTTTAACCAAACTTGCATTTACTGAGATAATTGTTTTGTTATGAATTAAACCAAAAGTTCTGTAATATATTGAA
GCTTAAAGATATCTTTAGAT

Downstream 100 bases:

>100_bases
TAAAATATGTCTTTAAGTCCAGTTATTTTTAGCATCGGTCCTGTTTCTATATATTGGTACTCTTTAGCATATGTTTTGGG
TATAGTTTTTGCATATTGGT

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 149

Protein sequence:

>149_residues
MEVIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHIAEYKAANQKNHKPKRERKLL
LHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIVKGKKLYDKRATIKQREWEREKSRLSKNNL

Sequences:

>Translated_149_residues
MEVIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHIAEYKAANQKNHKPKRERKLL
LHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIVKGKKLYDKRATIKQREWEREKSRLSKNNL
>Mature_149_residues
MEVIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHIAEYKAANQKNHKPKRERKLL
LHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIVKGKKLYDKRATIKQREWEREKSRLSKNNL

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes [H]

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family [H]

Homologues:

Organism=Escherichia coli, GI1788973, Length=146, Percent_Identity=48.6301369863014, Blast_Score=129, Evalue=9e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000037
- ProDom:   PD004488 [H]

Pfam domain/function: PF01668 SmpB [H]

EC number: NA

Molecular weight: Translated: 17459; Mature: 17459

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEVIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHI
CCCCCCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCEEECCCCCEEEECEEE
AEYKAANQKNHKPKRERKLLLHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIV
EHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEE
KGKKLYDKRATIKQREWEREKSRLSKNNL
ECCHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEVIAENRKARFEYFILEEFEAGMILLSSEVKSLRERKANISDAYVTEKKGEIWLNNMHI
CCCCCCCCCCEEEEEEEECCCCCEEEEHHHHHHHHHHHCCCCCCEEECCCCCEEEECEEE
AEYKAANQKNHKPKRERKLLLHKKEINKLIGQIKTSGITVVPLSIYFNDKGLAKTKIAIV
EHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEEEEEE
KGKKLYDKRATIKQREWEREKSRLSKNNL
ECCHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA