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The map label for this gene is secD [H]

Identifier: 190570897

GI number: 190570897

Start: 512249

End: 513763

Strand: Direct

Name: secD [H]

Synonym: WPa_0476

Alternate gene names: 190570897

Gene position: 512249-513763 (Clockwise)

Preceding gene: 190570896

Following gene: 190570901

Centisome position: 34.55

GC content: 33.73

Gene sequence:

>1515_bases
ATGCCAAACAAGATAATAGTTAAATCTCTTTCAGTGTTACTAATTTTTTTGCTGTCCTTATATATAATACTGCCAAATTT
TATTGATAATAAGTTCTTTACCTCAAAAAAGAGAATAAATTTAGGGCTTGACCTGAAAGGTGGATCATCTCTGCTTCTAA
ATGTAGACTTAGATTTTTACTTCAAAGAGAAACTAAGCATGCTAACCGATGAAATAAAAGAAGGTCTGTTAACACAAAAG
ATTGAATTTAGCGCAAAAAACGATAAACAAGTGGTTGTAACTTTAAATAATATTGATGATTACAAAAAAGTTTCAACGTT
AATACATAAAATAAACCCAAATTTAGAATTGAGTAGAAAAAATACTGCAATTTTCATTTCATATAAACCGCATTATAAGA
ATTCATTAATCAATGAAGTAGTTTCAGAGTCAATAGTTAATGTTCAAAGACGCTTAGATAAGCTTGGTACTAAGGAAGTA
AGTGTGCAAAAACAAGGACAAAATAAGATATTAGTCCAAGTTCCTGGAGTAGAAGACACTCAGCAGATAAAATCTCTGCT
TGGCAAAACAGCCAAGCTGGCCTTCCATTTGGCAAACACCAATGTAGCTAAAATGCAAGATATCGATCATGACACTACGA
TTATGCTCAAGGATTCTTTGGGTAATTCCTACCCGATATTCCGCAAAACTGAAATAGGCGGTGATTCATTAGTTAACGCA
TCAGTTAGATTTGGCAATTTAGGTAAACCAACAGTACATTTCAAATTCGACAGCATAGCAAGTAAAAAATTTGCAAAAAT
TACTAAAGAAAATGTAGGAAAGCCTTTTGCAATTGTTTTAGATAACACAGTCTTAACTGTACCAACAATACGTGAACCTA
TTCTAAATGGAGAGGGAGAAATTAGCGGTAATTTCACTGAAAAACAAGCGAGTGAACTTGCAATACTTTTAAAATCAGGT
GCACTACCTGCACCACTTAAAATAATTGAAGAAAAAAACATTGGTCCAAGCCTTGGAGAAGAGTCAATAAAAGCAGGAGA
AATTGCAGCAATAATCTCTATCATAGCCGTTGGTTTATCTATAATCATTACTTACGGCAAATTAGGCTTATTAGCGTCTG
TTGCACTCGTTTTTAATGTAATCTCTATACTACTCATTCTTACCTTACTTGAAGCAACTCTTACTCTCCCTGGAATTGCT
GGAATTGCGCTAACTGTTGGCATGTCAGTTGATGCAAATGTTTTAATATTTGAACGCATCCGCGAAGAAATAAGAGCAGG
AAAAAGAACAGCTCGTGCCATTGAAGAAGGATTTAAAAACGCAATAAAAACAATTCTTGATTCAAACCTCACTACACTAA
TTGCTTCAGGAATAATGTTCATTATTGGTAGCGGAGCAATTAGAGGATTTTCTATCACTTTATCGATAGGAGTTTTATGC
TCGATGTTTTCTGCAATTATAGTCACAAAACTTCTGATAGAATTGTGCATCAACCCACAAAAGCTAGTACTTTAG

Upstream 100 bases:

>100_bases
GACCATCAATTATAGATCAGGGCTTTAGGCGGTCCTAATCTTTTAGGTGCTTGTGATTAGCAACTATTCGGTCTACAATG
CACTAATATAGTTTAAATTT

Downstream 100 bases:

>100_bases
TATCTGTTCAGCAGAGTGACAAAATAAGATAGACGAGAAAAGACAACTAAATGGTTGTCATGAAAGTAGCTATCCAGTCT
TTTCGTCGTCAAAAACGTTG

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 504; Mature: 503

Protein sequence:

>504_residues
MPNKIIVKSLSVLLIFLLSLYIILPNFIDNKFFTSKKRINLGLDLKGGSSLLLNVDLDFYFKEKLSMLTDEIKEGLLTQK
IEFSAKNDKQVVVTLNNIDDYKKVSTLIHKINPNLELSRKNTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEV
SVQKQGQNKILVQVPGVEDTQQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIFRKTEIGGDSLVNA
SVRFGNLGKPTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSG
ALPAPLKIIEEKNIGPSLGEESIKAGEIAAIISIIAVGLSIIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIA
GIALTVGMSVDANVLIFERIREEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGAIRGFSITLSIGVLC
SMFSAIIVTKLLIELCINPQKLVL

Sequences:

>Translated_504_residues
MPNKIIVKSLSVLLIFLLSLYIILPNFIDNKFFTSKKRINLGLDLKGGSSLLLNVDLDFYFKEKLSMLTDEIKEGLLTQK
IEFSAKNDKQVVVTLNNIDDYKKVSTLIHKINPNLELSRKNTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEV
SVQKQGQNKILVQVPGVEDTQQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIFRKTEIGGDSLVNA
SVRFGNLGKPTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSG
ALPAPLKIIEEKNIGPSLGEESIKAGEIAAIISIIAVGLSIIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIA
GIALTVGMSVDANVLIFERIREEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGAIRGFSITLSIGVLC
SMFSAIIVTKLLIELCINPQKLVL
>Mature_503_residues
PNKIIVKSLSVLLIFLLSLYIILPNFIDNKFFTSKKRINLGLDLKGGSSLLLNVDLDFYFKEKLSMLTDEIKEGLLTQKI
EFSAKNDKQVVVTLNNIDDYKKVSTLIHKINPNLELSRKNTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEVS
VQKQGQNKILVQVPGVEDTQQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIFRKTEIGGDSLVNAS
VRFGNLGKPTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGEISGNFTEKQASELAILLKSGA
LPAPLKIIEEKNIGPSLGEESIKAGEIAAIISIIAVGLSIIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIAG
IALTVGMSVDANVLIFERIREEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGAIRGFSITLSIGVLCS
MFSAIIVTKLLIELCINPQKLVL

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=492, Percent_Identity=33.130081300813, Blast_Score=265, Evalue=5e-72,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001036
- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 55009; Mature: 54878

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPNKIIVKSLSVLLIFLLSLYIILPNFIDNKFFTSKKRINLGLDLKGGSSLLLNVDLDFY
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCHHH
FKEKLSMLTDEIKEGLLTQKIEFSAKNDKQVVVTLNNIDDYKKVSTLIHKINPNLELSRK
HHHHHHHHHHHHHHCHHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECC
NTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEVSVQKQGQNKILVQVPGVEDT
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCH
QQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIFRKTEIGGDSLVNA
HHHHHHHCCHHHEEEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCEEEC
SVRFGNLGKPTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGE
EEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCC
ISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEIAAIISIIAVGLS
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHH
IIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIAGIALTVGMSVDANVLIFERI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCHHHHHHH
REEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGAIRGFSITLSIGVLC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCEEEEEEEEHHHHHH
SMFSAIIVTKLLIELCINPQKLVL
HHHHHHHHHHHHHHHHCCCHHHCC
>Mature Secondary Structure 
PNKIIVKSLSVLLIFLLSLYIILPNFIDNKFFTSKKRINLGLDLKGGSSLLLNVDLDFY
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCEEEEEECCHHH
FKEKLSMLTDEIKEGLLTQKIEFSAKNDKQVVVTLNNIDDYKKVSTLIHKINPNLELSRK
HHHHHHHHHHHHHHCHHHEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHCCCCEEEECC
NTAIFISYKPHYKNSLINEVVSESIVNVQRRLDKLGTKEVSVQKQGQNKILVQVPGVEDT
CEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCEEEEEECCCCCH
QQIKSLLGKTAKLAFHLANTNVAKMQDIDHDTTIMLKDSLGNSYPIFRKTEIGGDSLVNA
HHHHHHHCCHHHEEEEECCCCHHHHHCCCCCCEEEEECCCCCCCCCEEEECCCCCCEEEC
SVRFGNLGKPTVHFKFDSIASKKFAKITKENVGKPFAIVLDNTVLTVPTIREPILNGEGE
EEEECCCCCCEEEEEEHHHHHHHHHHHHHHHCCCCEEEEECCEEEECCCHHHHHCCCCCC
ISGNFTEKQASELAILLKSGALPAPLKIIEEKNIGPSLGEESIKAGEIAAIISIIAVGLS
CCCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCHHCCHHHHHHHHHHHHHHHH
IIITYGKLGLLASVALVFNVISILLILTLLEATLTLPGIAGIALTVGMSVDANVLIFERI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHEEECCCCCCCHHHHHHH
REEIRAGKRTARAIEEGFKNAIKTILDSNLTTLIASGIMFIIGSGAIRGFSITLSIGVLC
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHEEEECCCEEEEEEEEHHHHHH
SMFSAIIVTKLLIELCINPQKLVL
HHHHHHHHHHHHHHHHCCCHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA